• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

新型琼脂降解菌Aquimarina agarilytica ZC1 的基因组草图序列。

Draft genome sequence of the novel agarolytic bacterium Aquimarina agarilytica ZC1.

机构信息

International Institute of Infection and Immunity, Shantou University Medical College, Shantou, Guangdong, China.

出版信息

J Bacteriol. 2012 May;194(10):2769. doi: 10.1128/JB.00311-12.

DOI:10.1128/JB.00311-12
PMID:22535944
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3347208/
Abstract

The marine bacterium ZC1 is the type strain of the recently identified novel species Aquimarina agarilytica. It can produce multiple agarases. Here we report the draft genome sequence of strain ZC1 (4,253,672 bp, with a GC content of 32.8%) and major findings from its annotation. It is the first reported genome in the genus Aquimarina.

摘要

海洋细菌 ZC1 是最近鉴定的新型种粘质海杆菌的模式菌株。它可以产生多种琼脂酶。本文报告了菌株 ZC1 的基因组草图序列（4,253,672bp，GC 含量为 32.8%）和注释的主要结果。这是在 Aquimarina 属中首次报道的基因组。

相似文献

1
Draft genome sequence of the novel agarolytic bacterium Aquimarina agarilytica ZC1.新型琼脂降解菌Aquimarina agarilytica ZC1 的基因组草图序列。
J Bacteriol. 2012 May;194(10):2769. doi: 10.1128/JB.00311-12.
2
An agarase of glycoside hydrolase family 16 from marine bacterium Aquimarina agarilytica ZC1.来自海洋细菌琼脂糖分解海栖菌ZC1的糖苷水解酶家族16的琼脂酶
FEMS Microbiol Lett. 2017 Feb 1;364(4). doi: 10.1093/femsle/fnx012.
3
Genome sequence of the marine bacterium Marinilabilia salmonicolor JCM 21150T.海洋细菌 Marinilabilia salmonicolor JCM 21150T 的基因组序列。
J Bacteriol. 2012 Jul;194(14):3746. doi: 10.1128/JB.00649-12.
4
Phylogenetic analyses of the genus Glaciecola: emended description of the genus Glaciecola, transfer of Glaciecola mesophila, G. agarilytica, G. aquimarina, G. arctica, G. chathamensis, G. polaris and G. psychrophila to the genus Paraglaciecola gen. nov. as Paraglaciecola mesophila comb. nov., P. agarilytica comb. nov., P. aquimarina comb. nov., P. arctica comb. nov., P. chathamensis comb. nov., P. polaris comb. nov. and P. psychrophila comb. nov., and description of Paraglaciecola oceanifecundans sp. nov., isolated from the Southern Ocean.冰叶菌属的系统发育分析：冰叶菌属的描述订正，将嗜冷冰叶菌、粘冰叶菌、海冰叶菌、北极冰叶菌、查塔姆冰叶菌、极地冰叶菌和耐寒冰叶菌归入新的副冰叶菌属，作为嗜冷副冰叶菌复合种、粘副冰叶菌复合种、海冰副冰叶菌复合种、北极副冰叶菌复合种、查塔姆副冰叶菌复合种、极地副冰叶菌复合种和耐寒副冰叶菌复合种，以及描述来自南大洋的海洋产副冰叶菌新种。
Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3264-3275. doi: 10.1099/ijs.0.065409-0. Epub 2014 Jun 30.
5
Aquimarina agarilytica sp. nov., an agarolytic species isolated from a red alga.粘质海萝新种，一种从红藻中分离出的琼脂分解菌。
Int J Syst Evol Microbiol. 2012 Apr;62(Pt 4):869-873. doi: 10.1099/ijs.0.027136-0. Epub 2011 May 27.
6
Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri.长海鱼菌属新种，从海水分离得到，以及对穆勒海鱼菌描述的修正。
Int J Syst Evol Microbiol. 2013 Apr;63(Pt 4):1235-1240. doi: 10.1099/ijs.0.041509-0. Epub 2012 Jul 6.
7
Draft genome sequence of Vitellibacter vladivostokensis KMM 3516(T): a protease-producing bacterium.海参崴卵黄杆菌KMM 3516(T)的基因组序列草图：一种产蛋白酶的细菌
Mar Genomics. 2015 Oct;23:49-50. doi: 10.1016/j.margen.2015.04.009. Epub 2015 May 6.
8
Genome sequence of the thermostable-agarase-producing marine bacterium Catenovulum agarivorans YM01(T), which reveals the presence of a series of agarase-encoding genes.产耐热琼脂酶海洋细菌 Catenovulum agarivorans YM01(T) 的基因组序列，该序列揭示了一系列琼脂酶编码基因的存在。
J Bacteriol. 2012 Oct;194(19):5484. doi: 10.1128/JB.01283-12.
9
Insight into the genome sequence of a sediment-adapted marine bacterium Neptunomonas antarctica S3-22(T) from Antarctica.对来自南极洲的适应沉积物的海洋细菌南极海王星菌S3-22(T)基因组序列的洞察。
Mar Genomics. 2016 Feb;25:29-31. doi: 10.1016/j.margen.2015.11.006. Epub 2015 Nov 12.
10
Dual Agarolytic Pathways in a Marine Bacterium, sp. Strain EJY3: Molecular and Enzymatic Verification.海洋细菌 sp. 菌株 EJY3 中的双琼脂降解途径：分子和酶学验证。
Appl Environ Microbiol. 2020 Mar 2;86(6). doi: 10.1128/AEM.02724-19.

引用本文的文献

1
Characterization and activity enhancement of a novel exo-type agarase Aga575 from Aquimarina agarilytica ZC1.从海泥栖菌 Aquimarina agarilytica ZC1 中鉴定和活性增强新型胞外型琼脂酶 Aga575
Appl Microbiol Biotechnol. 2021 Nov;105(21-22):8287-8296. doi: 10.1007/s00253-021-11553-y. Epub 2021 Oct 4.
2
Genomic insight into Aquimarina longa SW024 T: its ultra-oligotrophic adapting mechanisms and biogeochemical functions.长海栖菌SW024T的基因组洞察：其超寡营养适应机制和生物地球化学功能
BMC Genomics. 2015 Oct 12;16:772. doi: 10.1186/s12864-015-2005-3.
3
A comprehensive analysis of the microbial communities of healthy and diseased marine macroalgae and the detection of known and potential bacterial pathogens.对健康和患病海洋大型藻类的微生物群落进行全面分析，并检测已知和潜在的细菌病原体。
Front Microbiol. 2015 Feb 24;6:146. doi: 10.3389/fmicb.2015.00146. eCollection 2015.
4
Genome survey sequencing and genetic background characterization of Gracilariopsis lemaneiformis (Rhodophyta) based on next-generation sequencing.基于下一代测序的龙须菜（红藻门）基因组调查测序和遗传背景特征分析。
PLoS One. 2013 Jul 16;8(7):e69909. doi: 10.1371/journal.pone.0069909. Print 2013.
5
Genome Sequences of the Guillain-Barre Syndrome Outbreak-Associated Campylobacter jejuni Strains ICDCCJ07002 and ICDCCJ07004.与吉兰-巴雷综合征暴发相关的空肠弯曲菌菌株ICDCCJ07002和ICDCCJ07004的基因组序列
Genome Announc. 2013 May 23;1(3):e00256-13. doi: 10.1128/genomeA.00256-13.

本文引用的文献

1
Aquimarina agarilytica sp. nov., an agarolytic species isolated from a red alga.粘质海萝新种，一种从红藻中分离出的琼脂分解菌。
Int J Syst Evol Microbiol. 2012 Apr;62(Pt 4):869-873. doi: 10.1099/ijs.0.027136-0. Epub 2011 May 27.
2
De novo assembly of human genomes with massively parallel short read sequencing.利用大规模平行短读测序进行人类基因组从头组装。
Genome Res. 2010 Feb;20(2):265-72. doi: 10.1101/gr.097261.109. Epub 2009 Dec 17.
3
KEGG for linking genomes to life and the environment.京都基因与基因组百科全书，用于将基因组与生命及环境相联系。
Nucleic Acids Res. 2008 Jan;36(Database issue):D480-4. doi: 10.1093/nar/gkm882. Epub 2007 Dec 12.
4
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
5
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
6
Family 6 carbohydrate binding modules in beta-agarases display exquisite selectivity for the non-reducing termini of agarose chains.β-琼胶酶中的第6家族碳水化合物结合模块对琼脂糖链的非还原末端表现出极高的选择性。
J Biol Chem. 2006 Jun 23;281(25):17099-17107. doi: 10.1074/jbc.M600702200. Epub 2006 Apr 6.
7
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.基因本体论：生物学统一工具。基因本体论联合会。
Nat Genet. 2000 May;25(1):25-9. doi: 10.1038/75556.
8
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.