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基于片段的量子力学方法用于具有 Ewald 求和和长程静电相互作用的平均图像电荷惯例的周期性系统。

Fragment-based quantum mechanical methods for periodic systems with Ewald summation and mean image charge convention for long-range electrostatic interactions.

机构信息

Department of Chemistry, Digital Technology Center and Supercomputing Institute, University of Minnesota, Minneapolis, MN 55455, USA.

出版信息

Phys Chem Chem Phys. 2012 Jun 7;14(21):7821-9. doi: 10.1039/c2cp23758j. Epub 2012 May 2.

Abstract

We describe an Ewald-summation method to incorporate long-range electrostatic interactions into fragment-based electronic structure methods for periodic systems. The present method is an extension of the particle-mesh Ewald technique for combined quantum mechanical and molecular mechanical (QM/MM) calculations, and it has been implemented into the explicit polarization (X-Pol) potential to illustrate the computational details. As in the QM/MM-Ewald method, the X-Pol-Ewald approach is a linear-scaling electrostatic method, in which the short-range electrostatic interactions are determined explicitly in real space and the long-range Ewald pair potential is incorporated into the Fock matrix as a correction. To avoid the time-consuming Fock matrix update during the self-consistent field procedure, a mean image charge (MIC) approximation is introduced, in which the running average with a user-chosen correlation time is used to represent the long-range electrostatic correction as an average effect. Test simulations on liquid water show that the present X-Pol-Ewald method takes about 25% more CPU time than the usual X-Pol method using spherical cutoff, whereas the use of the MIC approximation reduces the extra costs for long-range electrostatic interactions by 15%. The present X-Pol-Ewald method provides a general procedure for incorporating long-range electrostatic effects into fragment-based electronic structure methods for treating biomolecular and condensed-phase systems under periodic boundary conditions.

摘要

我们描述了一种埃瓦尔德求和方法,用于将长程静电相互作用纳入基于片段的电子结构方法中,以处理周期性体系。本方法是用于组合量子力学和分子力学(QM/MM)计算的粒子网格埃瓦尔德技术的扩展,并且已经被实现到显式极化(X-Pol)势能中,以说明计算细节。与 QM/MM-Ewald 方法一样,X-Pol-Ewald 方法是一种线性标度静电方法,其中短程静电相互作用在实空间中显式确定,长程埃瓦尔德对势能作为校正项被纳入福克矩阵中。为了避免在自洽场过程中耗时的福克矩阵更新,引入了平均图像电荷(MIC)近似,其中使用用户选择的相关时间进行的运行平均值用于表示长程静电校正作为平均效应。在液态水中的测试模拟表明,与使用球形截止的常规 X-Pol 方法相比,本 X-Pol-Ewald 方法大约需要多 25%的 CPU 时间,而 MIC 近似的使用将长程静电相互作用的额外成本降低了 15%。本 X-Pol-Ewald 方法为在周期性边界条件下处理生物分子和凝聚相体系的基于片段的电子结构方法中纳入长程静电效应提供了一种通用程序。

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