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通过 NMR 测定膜蛋白结构的顺磁弛豫增强数据要求。

Requirements on paramagnetic relaxation enhancement data for membrane protein structure determination by NMR.

机构信息

Institute of Biophysical Chemistry and Center for Biomolecular Magnetic Resonance, Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany.

出版信息

Structure. 2012 Jun 6;20(6):1019-27. doi: 10.1016/j.str.2012.03.010. Epub 2012 May 3.

Abstract

Nuclear magnetic resonance (NMR) structure calculations of the α-helical integral membrane proteins DsbB, GlpG, and halorhodopsin show that distance restraints from paramagnetic relaxation enhancement (PRE) can provide sufficient structural information to determine their structure with an accuracy of about 1.5 Å in the absence of other long-range conformational restraints. Our systematic study with simulated NMR data shows that about one spin label per transmembrane helix is necessary for obtaining enough PRE distance restraints to exclude wrong topologies, such as pseudo mirror images, if only limited other NMR restraints are available. Consequently, an experimentally realistic amount of PRE data enables α-helical membrane protein structure determinations that would not be feasible with the very limited amount of conventional NOESY data normally available for these systems. These findings are in line with our recent first de novo NMR structure determination of a heptahelical integral membrane protein, proteorhodopsin, that relied extensively on PRE data.

摘要

核磁共振(NMR)结构计算表明,α-螺旋整合膜蛋白 DsbB、GlpG 和盐细菌视紫红质的结构可以通过顺磁弛豫增强(PRE)距离约束来确定,在没有其他长程构象约束的情况下,其结构的准确性约为 1.5Å。我们通过模拟 NMR 数据进行的系统研究表明,如果仅使用有限的其他 NMR 约束,每个跨膜螺旋大约需要一个自旋标记,以获得足够的 PRE 距离约束来排除错误的拓扑结构,例如伪镜像。因此,如果有实际可行的 PRE 数据量,就可以确定 α-螺旋膜蛋白的结构,而对于这些系统通常可用的非常有限的传统 NOESY 数据量,则无法确定其结构。这些发现与我们最近首次完全依赖 PRE 数据的七螺旋整合膜蛋白蛋白视紫红质的从头 NMR 结构测定结果一致。

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