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通过溶液核磁共振光谱法进行膜蛋白结构测定时的定点平行自旋标记和顺磁弛豫增强

Site-directed parallel spin-labeling and paramagnetic relaxation enhancement in structure determination of membrane proteins by solution NMR spectroscopy.

作者信息

Liang Binyong, Bushweller John H, Tamm Lukas K

机构信息

Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, 22908-0736, USA.

出版信息

J Am Chem Soc. 2006 Apr 5;128(13):4389-97. doi: 10.1021/ja0574825.

Abstract

A major challenge for the structure determination of integral membrane proteins by solution NMR spectroscopy is the limited number of NOE restraints in these systems stemming from extensive deuteration. Paramagnetic relaxation enhancement (PRE) by means of nitroxide spin-labels can provide valuable long-range distance information but, in practice, has limits in its application to membrane proteins because spin-labels are often incompletely reduced in highly apolar environments. Using the integral membrane protein OmpA as a model system, we introduce a method of parallel spin-labeling with paramagnetic and diamagnetic labels and show that distances in the range 15-24 Angstroms can be readily determined. The protein was labeled at 11 water-exposed and lipid-covered sites, and 320 PRE distance restraints were measured. The addition of these restraints resulted in significant improvement of the calculated backbone structure of OmpA. Structures of reasonable quality can even be calculated with PRE distance restraints only, i.e., in the absence of NOE distance restraints.

摘要

通过溶液核磁共振光谱法测定整合膜蛋白结构面临的一个主要挑战是,由于大量氘代,这些系统中的核Overhauser效应(NOE)限制数量有限。通过氮氧化物自旋标记进行顺磁弛豫增强(PRE)可以提供有价值的远程距离信息,但在实际应用中,由于自旋标记在高度非极性环境中往往不能完全还原,因此其应用于膜蛋白存在局限性。以整合膜蛋白OmpA作为模型系统,我们引入了一种使用顺磁和抗磁标记进行平行自旋标记的方法,并表明可以轻松确定15-24埃范围内的距离。该蛋白在11个暴露于水且被脂质覆盖的位点进行了标记,并测量了320个PRE距离限制。添加这些限制显著改善了计算得到的OmpA主链结构。甚至仅使用PRE距离限制,即在没有NOE距离限制的情况下,也可以计算出质量合理的结构。

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