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光合生物膜生长的流体动力学模型。

A fluid dynamics model of the growth of phototrophic biofilms.

作者信息

Clarelli F, Di Russo C, Natalini R, Ribot M

机构信息

Istituto per le Applicazioni del Calcolo "M.Picone", sez. Firenze, Consiglio Nazionale delle Ricerche, Polo Scientifico-Edificio F, CNR, 50019 Sesto Fiorentino, FI, Italy.

出版信息

J Math Biol. 2013 Jun;66(7):1387-408. doi: 10.1007/s00285-012-0538-5. Epub 2012 May 5.

DOI:10.1007/s00285-012-0538-5
PMID:22562622
Abstract

A system of nonlinear hyperbolic partial differential equations is derived using mixture theory to model the formation of biofilms. In contrast with most of the existing models, our equations have a finite speed of propagation, without using artificial free boundary conditions. Adapted numerical scheme will be described in detail and several simulations will be presented in one and more space dimensions in the particular case of cyanobacteria biofilms. Besides, the numerical scheme we present is able to deal in a natural and effective way with regions where one of the phases is vanishing.

摘要

利用混合理论推导了一个非线性双曲型偏微分方程组,用于对生物膜的形成进行建模。与大多数现有模型不同的是,我们的方程具有有限的传播速度,无需使用人工自由边界条件。将详细描述适用的数值格式,并在蓝藻生物膜的特定情况下,给出一维和多维空间的若干模拟结果。此外,我们提出的数值格式能够自然有效地处理其中一个相消失的区域。

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本文引用的文献

1
Biodiversity of phototrophic biofilms dwelling on monumental fountains.光养生物膜在纪念性喷泉上的生物多样性。
Microb Ecol. 2010 Jul;60(1):81-95. doi: 10.1007/s00248-010-9672-z. Epub 2010 May 6.
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A novel approach to evaluate the production kinetics of extracellular polymeric substances (EPS) by activated sludge using weighted nonlinear least-squares analysis.一种采用加权非线性最小二乘法分析来评估活性污泥中胞外聚合物(EPS)产生动力学的新方法。
Environ Sci Technol. 2009 May 15;43(10):3743-50. doi: 10.1021/es9001289.
3
Capsular polysaccharides of cultured phototrophic biofilms.
生物膜发育与结构建模中的连续和离散方法:综述
J Math Biol. 2018 Mar;76(4):945-1003. doi: 10.1007/s00285-017-1165-y. Epub 2017 Jul 24.
培养的光合生物膜的荚膜多糖
Biofouling. 2009;25(6):495-504. doi: 10.1080/08927010902914037.
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A multispecies biofilm model.一种多物种生物膜模型。
Biotechnol Bioeng. 1986 Mar;28(3):314-28. doi: 10.1002/bit.260280304.
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Colorful niches of phototrophic microorganisms shaped by vibrations of the water molecule.由水分子振动塑造的光合微生物的多彩生态位。
ISME J. 2007 Aug;1(4):271-82. doi: 10.1038/ismej.2007.59. Epub 2007 Jul 12.
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A flow-lane incubator for studying freshwater and marine phototrophic biofilms.一种用于研究淡水和海洋光合生物膜的流动通道培养箱。
J Microbiol Methods. 2007 Aug;70(2):336-45. doi: 10.1016/j.mimet.2007.05.013. Epub 2007 May 29.
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A multidimensional multispecies continuum model for heterogeneous biofilm development.用于异质生物膜发育的多维多物种连续体模型。
Bull Math Biol. 2007 Feb;69(2):765-89. doi: 10.1007/s11538-006-9168-7. Epub 2007 Jan 9.
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A multi-phase mathematical model of quorum sensing in a maturing Pseudomonas aeruginosa biofilm.成熟铜绿假单胞菌生物膜群体感应的多阶段数学模型。
Math Biosci. 2006 Oct;203(2):240-76. doi: 10.1016/j.mbs.2006.05.009. Epub 2006 Jul 1.
9
Cyanobacteria and biodeterioration of cultural heritage: a review.蓝细菌与文化遗产的生物劣化:综述
Microb Ecol. 2005 Jan;49(1):1-9. doi: 10.1007/s00248-003-1052-5. Epub 2004 Sep 23.
10
Bacterial biofilms: from the natural environment to infectious diseases.细菌生物膜:从自然环境到传染病
Nat Rev Microbiol. 2004 Feb;2(2):95-108. doi: 10.1038/nrmicro821.