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水溶液中 9H-鸟嘌呤的非绝热衰减动力学。

Nonadiabatic decay dynamics of 9H-guanine in aqueous solution.

机构信息

Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany.

出版信息

Phys Chem Chem Phys. 2012 Jun 14;14(22):8137-46. doi: 10.1039/c2cp40300e. Epub 2012 May 8.

DOI:10.1039/c2cp40300e
PMID:22569748
Abstract

The nonadiabatic decay of the biologically relevant guanine tautomer (9H-guanine) in aqueous solution has been investigated by trajectory surface hopping simulations in a quantum mechanical-molecular mechanical (QM-MM) framework. The QM part (9H-guanine) was treated at the semiempirical OM2/MRCI level, while the MM part (water) was described by the TIP3P force field. The optimized geometries for the relevant minima and conical intersections are qualitatively similar for 9H-guanine in the gas phase and in aqueous solution, while there are notable solvent-induced shifts in the computed vertical excitation energies (up to about 0.4 eV). Overall, the results from the static OM2/MRCI-based calculations are in reasonable agreement with the available ab initio and experimental data. The dynamics simulations show ultrafast nonradiative decay for 9H-guanine in water that is even slightly faster than in the gas phase, with time constants of 20 fs and around 0.3 ps for the S(2)→ S(1) and S(1)→ S(0) internal conversions, respectively. They predict a change in the S(1)→ S(0) decay mechanism when going from the gas phase to aqueous solution: the major pathway for 9H-guanine in water involves a conical intersection with an out-of-plane distortion of the carbonyl oxygen atom, which does not play any significant role in the gas phase, where the decay mainly proceeds via two other conical intersections characterized by ring distortions and out-of-plane displacement of the amino group, respectively. Possible reasons for this change in the mechanism are analyzed.

摘要

在量子力学-分子力学(QM-MM)框架内,通过轨迹表面跳跃模拟研究了在水溶液中具有生物学相关性的鸟嘌呤互变异构体(9H-鸟嘌呤)的非绝热衰减。QM 部分(9H-鸟嘌呤)采用半经验 OM2/MRCI 水平处理,而 MM 部分(水)采用 TIP3P 力场描述。对于气相和水溶液中相关的最小势能面和锥形交叉点的优化几何结构,9H-鸟嘌呤的定性相似,而计算的垂直激发能(高达约 0.4 eV)存在明显的溶剂诱导位移。总体而言,基于静态 OM2/MRCI 的计算结果与可用的从头算和实验数据基本一致。动力学模拟表明,9H-鸟嘌呤在水中的超快非辐射衰减甚至比在气相中更快,S(2)→S(1)和 S(1)→S(0)内转换的时间常数分别为 20 fs 和约 0.3 ps。它们预测了从气相到水溶液时 S(1)→S(0)衰减机制的变化:9H-鸟嘌呤在水中的主要途径涉及羰基氧原子的面外扭曲的锥形交叉,在气相中,这种羰基氧原子的面外扭曲的锥形交叉没有任何显著作用,其中衰减主要通过两个其他锥形交叉点进行,分别由环扭曲和面外氨基位移特征化。分析了这种机制变化的可能原因。

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