Vazana Yael, Moraïs Sarah, Barak Yoav, Lamed Raphael, Bayer Edward A
Department of Biological Chemistry, The Weizmann Institute of Science, Rehovot, Israel.
Methods Enzymol. 2012;510:429-52. doi: 10.1016/B978-0-12-415931-0.00023-9.
During the past several years, major progress has been accomplished in the production of "designer cellulosomes," artificial enzymatic complexes that were demonstrated to efficiently degrade crystalline cellulose. This progress is part of a global attempt to promote biomass waste solutions and biofuel production. In designer cellulosomes, each enzyme is equipped with a dockerin module that interacts specifically with one of the cohesin modules of the chimeric scaffoldin. Artificial scaffoldins serve as docking backbones and contain a cellulose-specific carbohydrate-binding module that directs the enzymatic complex to the cellulosic substrate, and one or more cohesin modules from different natural cellulosomal species, each exhibiting a different specificity, that allows the specific incorporation of the desired matching dockerin-bearing enzymes. With natural cellulosomal components, the insertion of the enzymes in the scaffold would presumably be random, and we would not be able to control the contents of the resulting artificial cellulosome. There are an increasing number of papers describing the production of designer cellulosomes either in vitro, ex vivo, or in vivo. These types of studies are particularly intricate, and a number of such publications are less meaningful in the final analysis, as important controls are frequently excluded. In this chapter, we hope to give a complete overview of the methodologies essential for designing and examining cellulosome complexes.
在过去几年中,“设计型纤维小体”的生产取得了重大进展,这种人工酶复合物已被证明能有效降解结晶纤维素。这一进展是全球推动生物质废物处理方案和生物燃料生产努力的一部分。在设计型纤维小体中,每种酶都配备了一个dockerin模块,该模块与嵌合支架蛋白的一个黏附素模块特异性相互作用。人工支架蛋白作为对接主干,包含一个纤维素特异性碳水化合物结合模块,可将酶复合物导向纤维素底物,以及来自不同天然纤维小体物种的一个或多个黏附素模块,每个模块都表现出不同的特异性,这使得能够特异性掺入所需的匹配dockerin酶。对于天然纤维小体成分,酶在支架中的插入可能是随机的,我们将无法控制所得人工纤维小体的成分。越来越多的论文描述了设计型纤维小体在体外、离体或体内的生产。这类研究特别复杂,而且许多此类出版物在最终分析中意义不大,因为重要的对照常常被排除。在本章中,我们希望对设计和检测纤维小体复合物所需的方法进行全面概述。