Stoddard B L, Bruhnke J, Koenigs P, Porter N, Ringe D, Petsko G A
Department of Chemistry, Massachusetts Institute of Technology, Cambridge 02139.
Biochemistry. 1990 Sep 4;29(35):8042-51. doi: 10.1021/bi00487a008.
Inhibited chymotrypsin was reactivated through the photolysis of the covalently bound light-reversible cinnamates described in our previous paper [Stoddard, B.L., Bruhnke, J., Porter, N.A., Ringe, D., & Petsko, G. (1990) Biochemistry 29, 4871-4879]. The light-induced deacylation was accomplished both in solution and in protein crystals, with the release of inhibitor from the crystal monitored and confirmed by X-ray diffraction. The product of photolysis has been characterized as a 3-methylcoumarin, leading to a mechanism for light-driven deacylation of an internal lactonization that is dependent on the presence of an internal hydroxyl nucleophile. The acyl enzyme formed from cinnamate A is not suitable for photochemical studies, as the complex has a short half-life in solution and does not have a chromophore that is well separated from protein absorbance. Cinnamate B, with a p-diethylamino substituent, shows an enzyme deacylation rate enhancement of 10(9) for the cis photoisomer relative to the trans starting material. The half-life and deacylation rate of this compound in the E-I complex after photon absorption have been directly measured by subsecond UV absorption studies. X-ray diffraction studies of photoactivation using a flow cell show that the cinnamate B acyl enzyme complex is fully capable of light-induced isomerization and regeneration of native enzyme in the crystalline state. The E-I complex formed upon binding of cinnamate A, however, shows little if any effect from irradiation due to competitive absorbance by the highly concentrated protein at the shorter UV wavelengths. Photolysis of cinnamate B appears to occur on a time scale fast enough for applications in crystallographic studies of enzymatic intermediate-state structures.
通过光解我们之前论文[斯托达德,B.L.,布鲁恩克,J.,波特,N.A.,林格,D.,& 佩茨科,G.(1990年)《生物化学》29卷,4871 - 4879页]中描述的共价结合的光可逆肉桂酸酯,被抑制的胰凝乳蛋白酶得以重新激活。光诱导的脱酰基反应在溶液和蛋白质晶体中均能完成,通过X射线衍射监测并确认抑制剂从晶体中的释放。光解产物已被鉴定为3 - 甲基香豆素,由此得出一种光驱动脱酰基的机制,即内部内酯化反应,该反应依赖于内部羟基亲核试剂的存在。由肉桂酸酯A形成的酰基酶不适用于光化学研究,因为该复合物在溶液中的半衰期较短,且没有与蛋白质吸收峰充分分离的发色团。带有对 - 二乙氨基取代基的肉桂酸酯B,相对于反式起始原料,其顺式光异构体的酶脱酰基速率提高了10⁹ 。通过亚秒级紫外吸收研究直接测量了该化合物在E - I复合物中光吸收后的半衰期和脱酰基速率。使用流通池对光活化进行的X射线衍射研究表明,肉桂酸酯B酰基酶复合物在晶体状态下完全能够进行光诱导的异构化和天然酶的再生。然而,由于在较短紫外波长下高浓度蛋白质的竞争性吸收,肉桂酸酯A结合形成的E - I复合物在照射下几乎没有任何影响。肉桂酸酯B的光解似乎发生在足够快的时间尺度上,适用于酶促中间态结构的晶体学研究。