Stoddard B L, Koenigs P, Porter N, Petratos K, Petsko G A, Ringe D
Massachusetts Institute of Technology, Department of Chemistry, Cambridge 02139.
Proc Natl Acad Sci U S A. 1991 Jul 1;88(13):5503-7. doi: 10.1073/pnas.88.13.5503.
Crystals of gamma-chymotrypsin inhibited with the photodissociable group trans-p-diethylamino-o-hydroxy-alpha-methylcinnamate were irradiated with a 1-msec flash from a high-energy xenon flashlamp in the presence of the mechanism-based inhibitor 3-benzyl-6-chloro-2-pyrone. The ensuing reaction was monitored by collection of sequential, single-exposure Laue x-ray diffraction patterns. The experiment was also performed in solution to verify the regeneration of catalytic activity and the subsequent inhibition of the enzyme by pyrone after photolysis. The resulting crystallographic structures show the presence of covalently bound cinnamate prior to photolysis, the generation of "free" enzyme after irradiation of the crystal, and the slow formation of a pyrone-inhibited complex several hours after photolysis. The structure of the free enzyme shows a significant proportion of the active sites in the crystal to contain a naturally occurring, noncovalently bound tetrapeptide inhibitor [Dixon, M.M. & Matthews, B.W. (1989) Biochemistry 28, 7033-7038], even after cinnamate acylation and photolysis. Data collected simultaneously with irradiation show the crystal to be slightly disordered during photolysis, leading to streaked x-ray photos. The resulting maps are suggestive of a bicyclic coumarin species produced by photolysis and deacylation; however, the electron density is difficult to model unambiguously by one unique chemical state. Nevertheless, Laue crystallography is shown to be capable of visualizing time-dependent chemical changes in the active site of an enzyme.
用基于光解离基团反式 - 对二乙氨基 - 邻羟基 - α - 甲基肉桂酸酯抑制的γ - 胰凝乳蛋白酶晶体,在基于机制的抑制剂3 - 苄基 - 6 - 氯 - 2 - 吡喃存在下,用高能氙闪光灯发出的1毫秒闪光进行照射。通过收集连续的单曝光劳厄X射线衍射图来监测随后的反应。该实验也在溶液中进行,以验证催化活性的再生以及光解后吡喃对酶的后续抑制作用。所得的晶体结构表明,光解前存在共价结合的肉桂酸酯,晶体照射后产生“游离”酶,并且光解后数小时缓慢形成吡喃抑制的复合物。游离酶的结构表明,即使经过肉桂酸酯酰化和光解,晶体中相当一部分活性位点仍含有天然存在的非共价结合的四肽抑制剂[狄克逊,M.M. & 马修斯,B.W.(1989年)《生物化学》28卷,7033 - 7038页]。与照射同时收集的数据表明,晶体在光解过程中略有无序,导致X射线照片出现条纹。所得图谱暗示了光解和脱酰作用产生的双环香豆素物种;然而,电子密度难以通过一种独特的化学状态明确建模。尽管如此,劳厄晶体学被证明能够可视化酶活性位点中随时间变化的化学变化。