Suppr超能文献

时间分辨蛋白质晶体学。

Time-resolved protein crystallography.

作者信息

Johnson L N

机构信息

Laboratory of Molecular Biophysics, University of Oxford, United Kingdom.

出版信息

Protein Sci. 1992 Oct;1(10):1237-43. doi: 10.1002/pro.5560011002.

Abstract

Advances in synchrotron radiation technology have allowed exposure times from protein crystals of the order of milliseconds to be used routinely, and in exceptional circumstances exposure times of 100 ps have been obtained. However, many data sets take seconds to record because of the slow time scale of film change or crystal reorientation or translation when more than one exposure is required. This problem has been addressed by Amemiya et al. (1989). There has been considerable progress in methods to initiate reactions in protein crystals, especially the development of photolabile caged compounds but also temperature jump, pH jump, and diffusion. Although flash lamps deliver pulses of 100 mJ/ms, often several pulses are required to release sufficient product, and reaction initiation can take several seconds. Laser illumination can provide more powerful input, but the laser must be accommodated within the restricted space at the synchrotron station. The requirement to maintain synchrony among the molecules in the crystal lattice as the reaction proceeds and to ensure that the lifetime of intermediates is longer than data collection rates emphasizes the need for chemical characterization of the reaction under study. As Ringe advocated in the studies with chymotrypsin, it may be more profitable to devise conditions under which certain intermediates along the reaction pathway accumulate in the crystal and to record these in a series of discrete steps rather than continuous monitoring of the reaction. The Laue method is limited to those proteins that give well-ordered crystals and problems of transient disorder on initiation of reaction and problems of radiation damage need to be overcome or avoided by suitable experimental protocols.(ABSTRACT TRUNCATED AT 250 WORDS)

摘要

同步辐射技术的进步使得从蛋白质晶体获取毫秒级的曝光时间得以常规使用,在特殊情况下还能获得100皮秒的曝光时间。然而,由于更换胶片的时间尺度较慢,或者在需要多次曝光时晶体重新定向或平移,许多数据集需要数秒才能记录下来。这个问题已由阿部宫等人(1989年)解决。在引发蛋白质晶体中反应的方法方面取得了相当大的进展,特别是光不稳定笼形化合物的开发,还有温度跃升、pH值跃升和扩散。尽管闪光灯能发出100毫焦/毫秒的脉冲,但通常需要几个脉冲才能释放出足够的产物,而且反应引发可能需要几秒钟。激光照射可以提供更强的输入,但激光必须安置在同步加速器站有限的空间内。随着反应进行,需要保持晶格中分子之间的同步,并确保中间体的寿命长于数据收集速率,这强调了对所研究反应进行化学表征的必要性。正如林格在对胰凝乳蛋白酶的研究中所主张的,设计条件使反应途径上的某些中间体在晶体中积累,并以一系列离散步骤记录这些中间体,而不是连续监测反应,可能会更有成效。劳厄法仅限于那些能形成有序晶体的蛋白质,并且需要通过合适的实验方案来克服或避免反应开始时的瞬态无序问题以及辐射损伤问题。(摘要截取自250字)

相似文献

1
Time-resolved protein crystallography.
Protein Sci. 1992 Oct;1(10):1237-43. doi: 10.1002/pro.5560011002.
2
Laue and monochromatic diffraction studies on catalysis in phosphorylase b crystals.
Protein Sci. 1994 Aug;3(8):1178-96. doi: 10.1002/pro.5560030804.
3
Time-resolved methods in biophysics. 6. Time-resolved Laue crystallography as a tool to investigate photo-activated protein dynamics.
Photochem Photobiol Sci. 2007 Oct;6(10):1047-56. doi: 10.1039/b704249c. Epub 2007 Jul 25.
4
The beamlines of ELETTRA and their application to structural biology.
Genetica. 1999;106(1-2):171-80. doi: 10.1023/a:1003757718266.
5
Towards time-resolved diffraction studies with glycogen phosphorylase.
Ciba Found Symp. 1991;161:75-86; discussion 86-90. doi: 10.1002/9780470514146.ch6.
6
Towards time-resolved serial crystallography in a microfluidic device.
Acta Crystallogr F Struct Biol Commun. 2015 Jul;71(Pt 7):823-30. doi: 10.1107/S2053230X15009061. Epub 2015 Jun 27.
7
Time-resolved crystallography and protein design: signalling photoreceptors and optogenetics.
Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130568. doi: 10.1098/rstb.2013.0568.
8
Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.
Methods Mol Biol. 2021;2305:203-228. doi: 10.1007/978-1-0716-1406-8_11.
10
Laue diffraction and time-resolved crystallography: a personal history.
Philos Trans A Math Phys Eng Sci. 2019 Jun 17;377(2147):20180243. doi: 10.1098/rsta.2018.0243.

引用本文的文献

1
Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.
Methods Mol Biol. 2021;2305:203-228. doi: 10.1007/978-1-0716-1406-8_11.
2
Protein tracking and detection of protein motion using atomic force microscopy.
Biophys J. 1996 May;70(5):2421-31. doi: 10.1016/S0006-3495(96)79812-0.
3
Fleeting opportunities.
Proc Natl Acad Sci U S A. 1993 Mar 15;90(6):2103-4. doi: 10.1073/pnas.90.6.2103.

本文引用的文献

2
Time-resolved macromolecular crystallography.
Annu Rev Biophys Biophys Chem. 1989;18:309-32. doi: 10.1146/annurev.bb.18.060189.001521.
4
Photolysis and deacylation of inhibited chymotrypsin.
Biochemistry. 1990 Sep 4;29(35):8042-51. doi: 10.1021/bi00487a008.
5
Structure of an acyl-enzyme intermediate during catalysis: (guanidinobenzoyl)trypsin.
Biochemistry. 1990 Sep 11;29(36):8351-7. doi: 10.1021/bi00488a022.
6
Progress with Laue diffraction studies on protein and virus crystals.
Biochemistry. 1990 Feb 20;29(7):1669-78. doi: 10.1021/bi00459a001.
8
Observation of the light-triggered binding of pyrone to chymotrypsin by Laue x-ray crystallography.
Proc Natl Acad Sci U S A. 1991 Jul 1;88(13):5503-7. doi: 10.1073/pnas.88.13.5503.
10
Towards time-resolved diffraction studies with glycogen phosphorylase.
Ciba Found Symp. 1991;161:75-86; discussion 86-90. doi: 10.1002/9780470514146.ch6.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验