Department of Urology, Biochemistry and Molecular Biology, University of Southern California/Norris Comprehensive Cancer Center Keck School of Medicine, University of Southern California, Los Angeles, CA 90089-9181, USA.
Department of Urology, Biochemistry and Molecular Biology, University of Southern California/Norris Comprehensive Cancer Center Keck School of Medicine, University of Southern California, Los Angeles, CA 90089-9181, USA; Program in Genetic, Molecular and Cellular Biology, University of Southern California/Norris Comprehensive Cancer Center Keck School of Medicine, University of Southern California, Los Angeles, CA 90089-9181, USA.
Cancer Cell. 2012 May 15;21(5):655-667. doi: 10.1016/j.ccr.2012.03.045.
Cancer cells typically exhibit aberrant DNA methylation patterns that can drive malignant transformation. Whether cancer cells are dependent on these abnormal epigenetic modifications remains elusive. We used experimental and bioinformatic approaches to unveil genomic regions that require DNA methylation for survival of cancer cells. First, we surveyed the residual DNA methylation profiles in cancer cells with highly impaired DNA methyltransferases. Then, we clustered these profiles according to their DNA methylation status in primary normal and tumor tissues. Finally, we used gene expression meta-analysis to identify regions that are dependent on DNA methylation-mediated gene silencing. We further showed experimentally that these genes must be silenced by DNA methylation for cancer cell survival, suggesting these are key epigenetic events associated with tumorigenesis.
癌细胞通常表现出异常的 DNA 甲基化模式,这些模式可以驱动恶性转化。然而,癌细胞是否依赖于这些异常的表观遗传修饰仍然难以捉摸。我们使用实验和生物信息学方法来揭示需要 DNA 甲基化才能存活的基因组区域。首先,我们调查了具有高度受损 DNA 甲基转移酶的癌细胞中的残留 DNA 甲基化谱。然后,我们根据这些在原发性正常和肿瘤组织中的 DNA 甲基化状态对这些谱进行聚类。最后,我们使用基因表达荟萃分析来确定依赖于 DNA 甲基化介导的基因沉默的区域。我们进一步通过实验表明,这些基因的沉默必须依赖于 DNA 甲基化才能使癌细胞存活,这表明这些是与肿瘤发生相关的关键表观遗传事件。