弗朗西斯菌属完整基因组序列的研究。
Complete genome sequence of Francisella philomiragia ATCC 25017.
机构信息
Genome Sciences, Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
出版信息
J Bacteriol. 2012 Jun;194(12):3266. doi: 10.1128/JB.00413-12.
Abstract
Francisella philomiragia is a saprophytic gammaproteobacterium found only occasionally in immunocompromised individuals and is the nearest neighbor to the causative agent of tularemia and category A select agent Francisella tularensis. To shed insight into the key genetic differences and the evolution of these two distinct lineages, we sequenced the first complete genome of F. philomiragia strain ATCC 25017, which was isolated as a free-living microorganism from water in Bear River Refuge, Utah.
摘要
弗朗西斯菌属是一种腐生的γ变形菌，仅偶尔在免疫功能低下的个体中发现，与土拉热弗朗西斯菌（造成土拉热的病原体）和 A 类选择性制剂弗朗西斯菌属（一种病原体）关系最为密切。为了深入了解这两个截然不同谱系的关键遗传差异和进化，我们对从犹他州贝尔河避难所水中分离出来的自由生活微生物弗朗西斯菌属菌株 ATCC 25017 进行了全基因组测序，这是该菌的首个完整基因组。
相似文献
1
Complete genome sequence of Francisella philomiragia ATCC 25017.
J Bacteriol. 2012 Jun;194(12):3266. doi: 10.1128/JB.00413-12.
2
Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources.
BMC Genomics. 2012 Aug 24;13:422. doi: 10.1186/1471-2164-13-422.
3
Francisella philomiragia subsp. noatunensis subsp. nov., isolated from farmed Atlantic cod (Gadus morhua L.).
Int J Syst Evol Microbiol. 2007 Sep;57(Pt 9):1960-1965. doi: 10.1099/ijs.0.64765-0.
4
Genome sequence and phenotypic analysis of a first German Francisella sp. isolate (W12-1067) not belonging to the species Francisella tularensis.
BMC Microbiol. 2014 Jun 25;14:169. doi: 10.1186/1471-2180-14-169.
5
Elevation of Francisella philomiragia subsp. noatunensis Mikalsen et al. (2007) to Francisella noatunensis comb. nov. [syn. Francisella piscicida Ottem et al. (2008) syn. nov.] and characterization of Francisella noatunensis subsp. orientalis subsp. nov., two important fish pathogens.
J Appl Microbiol. 2009 Apr;106(4):1231-43. doi: 10.1111/j.1365-2672.2008.04092.x. Epub 2009 Jan 24.
6
Analysis of 16S ribosomal DNA sequences of Francisella strains and utilization for determination of the phylogeny of the genus and for identification of strains by PCR.
Int J Syst Bacteriol. 1994 Jan;44(1):38-46. doi: 10.1099/00207713-44-1-38.
7
Identification and characterization of Francisella species from natural warm springs in Utah, USA.
Lett Appl Microbiol. 2012 Apr;54(4):313-24. doi: 10.1111/j.1472-765X.2012.03214.x. Epub 2012 Feb 15.
8
Francisella novicida and F. philomiragia biofilm features conditionning fitness in spring water and in presence of antibiotics.
PLoS One. 2020 Feb 5;15(2):e0228591. doi: 10.1371/journal.pone.0228591. eCollection 2020.
9
Description of Francisella hispaniensis sp. nov., isolated from human blood, reclassification of Francisella novicida (Larson et al. 1955) Olsufiev et al. 1959 as Francisella tularensis subsp. novicida comb. nov. and emended description of the genus Francisella.
Int J Syst Evol Microbiol. 2010 Aug;60(Pt 8):1887-1896. doi: 10.1099/ijs.0.015941-0. Epub 2009 Sep 25.
10
Diversity of Francisella species in environmental samples from Martha's Vineyard, Massachusetts.
Microb Ecol. 2010 Feb;59(2):277-83. doi: 10.1007/s00248-009-9568-y. Epub 2009 Aug 12.
引用本文的文献
1
Two-Component Systems in Species.
Front Cell Infect Microbiol. 2019 Jun 12;9:198. doi: 10.3389/fcimb.2019.00198. eCollection 2019.
2
Reveals Niche Differences Between Highly Pathogenic and Closely Related Strains of spp.
Front Cell Infect Microbiol. 2018 Jun 5;8:188. doi: 10.3389/fcimb.2018.00188. eCollection 2018.
3
Francisella philomiragia: Think of Chronic Granulomatous Disease.
J Clin Immunol. 2018 Apr;38(3):257-259. doi: 10.1007/s10875-018-0498-7. Epub 2018 Apr 16.
4
Induction of β-Lactamase Activity and Decreased β-Lactam Susceptibility by CO in Clinical Bacterial Isolates.
mSphere. 2017 Jul 19;2(4). doi: 10.1128/mSphere.00266-17. eCollection 2017 Jul-Aug.
5
Whole-Genome Relationships among Francisella Bacteria of Diverse Origins Define New Species and Provide Specific Regions for Detection.
Appl Environ Microbiol. 2017 Jan 17;83(3). doi: 10.1128/AEM.02589-16. Print 2017 Feb 1.
6
Rapid Identification and Characterization of Francisella by Molecular Biology and Other Techniques.
Open Microbiol J. 2016 Apr 14;10:64-77. doi: 10.2174/1874285801610010064. eCollection 2016.
7
Francisella philomiragia Infection and Lethality in Mammalian Tissue Culture Cell Models, Galleria mellonella, and BALB/c Mice.
Front Microbiol. 2016 May 24;7:696. doi: 10.3389/fmicb.2016.00696. eCollection 2016.
8
Genome sequence and phenotypic analysis of a first German Francisella sp. isolate (W12-1067) not belonging to the species Francisella tularensis.
BMC Microbiol. 2014 Jun 25;14:169. doi: 10.1186/1471-2180-14-169.
9
A Francisella virulence factor catalyses an essential reaction of biotin synthesis.
Mol Microbiol. 2014 Jan;91(2):300-14. doi: 10.1111/mmi.12460. Epub 2013 Dec 9.
10
Biofilms: an advancement in our understanding of Francisella species.
Virulence. 2013 Nov 15;4(8):833-46. doi: 10.4161/viru.27023. Epub 2013 Nov 12.
本文引用的文献
1
Francisella tularensis molecular typing using differential insertion sequence amplification.
J Clin Microbiol. 2011 Aug;49(8):2786-97. doi: 10.1128/JCM.00033-11. Epub 2011 May 25.
2
Genomics. Genome project standards in a new era of sequencing.
Science. 2009 Oct 9;326(5950):236-7. doi: 10.1126/science.1180614.
3
Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies.
PLoS Pathog. 2009 May;5(5):e1000459. doi: 10.1371/journal.ppat.1000459. Epub 2009 May 29.
4
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.
Genome Biol. 2007;8(6):R102. doi: 10.1186/gb-2007-8-6-r102.
5
Bacillus anthracis phospholipases C facilitate macrophage-associated growth and contribute to virulence in a murine model of inhalation anthrax.
Infect Immun. 2006 Jul;74(7):3756-64. doi: 10.1128/IAI.00307-06.
6
The complete genome sequence of Francisella tularensis, the causative agent of tularemia.
Nat Genet. 2005 Feb;37(2):153-9. doi: 10.1038/ng1499. Epub 2005 Jan 9.
7
Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis.
Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13826-31. doi: 10.1073/pnas.0404012101. Epub 2004 Sep 9.
8
Microbial minimalism: genome reduction in bacterial pathogens.
Cell. 2002 Mar 8;108(5):583-6. doi: 10.1016/s0092-8674(02)00665-7.
Zotero 插件