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一个包含3342个用于基因组测序的有用九聚体引物的文库。

A library of 3342 useful nonamer primers for genome sequencing.

作者信息

Siemieniak D R, Slightom J L

机构信息

Molecular Biology Unit Upjohn Company, Kalamazoo, MI 49007.

出版信息

Gene. 1990 Nov 30;96(1):121-4. doi: 10.1016/0378-1119(90)90350-z.

DOI:10.1016/0378-1119(90)90350-z
PMID:2265749
Abstract

Primer-directed sequencing, of double-stranded large recombinant DNA molecules, has not been accepted because of the delay and expenses involved in the synthesis of oligodeoxyribonucleotide primers. A potential solution to this problem was proposed by Studier [Proc. Natl. Acad. Sci. USA 86 (1989) 6917-6921] for using a library of short oligomer primers. Szybalski [Gene 90 (1990) 177-178] has made a complementary proposal using ligated hexamers to reduce the number of oligomers needed. We have used a set of rules for a computer-aided selection of a library consisting of 3342 specific nonamers. The effectiveness of this library of nonamers to sequence specific genes was studied using human sequences available in GenBank.

摘要

由于合成寡脱氧核糖核苷酸引物存在延迟和费用问题,双链大重组DNA分子的引物定向测序尚未被广泛接受。Studier [美国国家科学院院刊86 (1989) 6917 - 6921] 提出了一个潜在的解决方案,即使用短寡聚物引物文库。Szybalski [基因90 (1990) 177 - 178] 提出了一个互补方案,即使用连接的六聚体来减少所需寡聚物的数量。我们使用了一组规则,通过计算机辅助选择了一个由3342个特定九聚体组成的文库。利用GenBank中可用的人类序列研究了这个九聚体文库对特定基因进行测序的有效性。

相似文献

1
A library of 3342 useful nonamer primers for genome sequencing.一个包含3342个用于基因组测序的有用九聚体引物的文库。
Gene. 1990 Nov 30;96(1):121-4. doi: 10.1016/0378-1119(90)90350-z.
2
Nucleotide sequencing double-stranded plasmids with primers selected from a nonamer library.
Biotechniques. 1994 Sep;17(3):536-7, 540-4.
3
Proposal for sequencing DNA using ligation of hexamers to generate sequential elongation primers (SPEL-6).利用六聚体连接生成序列延伸引物(SPEL-6)进行DNA测序的提案。
Gene. 1990 May 31;90(1):177-8. doi: 10.1016/0378-1119(90)90458-4.
4
Targeted DNA sequencing: rapid identification of DNA clones by sequencing DNA using mixed oligodeoxynucleotide probes as primers.靶向DNA测序:使用混合寡脱氧核苷酸探针作为引物对DNA进行测序,从而快速鉴定DNA克隆。
Biotechniques. 1990 Jul;9(1):28-32.
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Assembly of 18-nucleotide primers by ligation of three hexamers: sequencing of large genomes by primer walking.通过连接三个六聚体组装18核苷酸引物:引物步移法对大基因组进行测序
Anal Biochem. 1994 Aug 15;221(1):127-35. doi: 10.1006/abio.1994.1388.
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A strategy for high-volume sequencing of cosmid DNAs: random and directed priming with a library of oligonucleotides.一种用于黏粒DNA高通量测序的策略:使用寡核苷酸文库进行随机和定向引物延伸。
Proc Natl Acad Sci U S A. 1989 Sep;86(18):6917-21. doi: 10.1073/pnas.86.18.6917.
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A simple and efficient method for the oligodeoxyribonucleotide-directed mutagenesis of double-stranded plasmid DNA.一种用于双链质粒DNA的寡脱氧核糖核苷酸定向诱变的简单高效方法。
Gene. 1992 Nov 2;121(1):17-24. doi: 10.1016/0378-1119(92)90157-k.
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Fluorescence-based cycle sequencing with primers selected from a nonamer library.基于荧光的循环测序,使用从九聚体文库中选择的引物。
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Efficient preparation of short DNA sequence ladders potentially suitable for MALDI-TOF DNA sequencing.高效制备可能适用于基质辅助激光解吸电离飞行时间(MALDI-TOF)DNA测序的短DNA序列阶梯。
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引用本文的文献

1
Octamer-primed sequencing technology: development of primer identification software.八聚体引发测序技术:引物识别软件的开发
Nucleic Acids Res. 2000 Apr 1;28(7):E22. doi: 10.1093/nar/28.7.e22.
2
Genome sequencing on both strands: the Janus strategy.双链基因组测序:双面神策略。
Nucleic Acids Res. 1993 Jul 25;21(15):3385-90. doi: 10.1093/nar/21.15.3385.
3
Fluorescence-based DNA sequencing with hexamer primers.基于荧光的六聚体引物DNA测序
Nucleic Acids Res. 1993 Jul 11;21(14):3331-2. doi: 10.1093/nar/21.14.3331.
4
A DNA sequencing strategy that requires only five bases of known terminal sequence for priming.一种仅需五个已知末端序列碱基用于引发的DNA测序策略。
Proc Natl Acad Sci U S A. 1995 Oct 24;92(22):10162-6. doi: 10.1073/pnas.92.22.10162.