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基于定位模体预测革兰氏阳性菌蛋白质的亚细胞定位。

Predicting gram-positive bacterial protein subcellular localization based on localization motifs.

机构信息

Department of Chemistry, Tongji University, Siping Road 1239, Shanghai 200092, China.

出版信息

J Theor Biol. 2012 Sep 7;308:135-40. doi: 10.1016/j.jtbi.2012.05.031. Epub 2012 Jun 8.

Abstract

The subcellular localization of proteins is closely related to their functions. In this work, we propose a novel approach based on localization motifs to improve the accuracy of predicting subcellular localization of Gram-positive bacterial proteins. Our approach performed well on a five-fold cross validation with an overall success rate of 89.5%. Besides, the overall success rate of an independent testing dataset was 97.7%. Moreover, our approach was tested using a new experimentally-determined set of Gram-positive bacteria proteins and achieved an overall success rate of 96.3%.

摘要

蛋白质的亚细胞定位与其功能密切相关。在这项工作中,我们提出了一种基于定位基序的新方法,以提高预测革兰氏阳性菌蛋白质亚细胞定位的准确性。我们的方法在五重交叉验证中表现良好,总体成功率为 89.5%。此外,独立测试数据集的总体成功率为 97.7%。此外,我们还使用一组新的实验确定的革兰氏阳性菌蛋白质对我们的方法进行了测试,总体成功率为 96.3%。

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