Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA.
Addict Behav. 2012 Oct;37(10):1138-44. doi: 10.1016/j.addbeh.2012.05.010. Epub 2012 May 26.
Although there is evidence that opioid dependence (OD) is heritable, efforts to identify genes contributing to risk for the disorder have been hampered by its complex etiology and variable clinical manifestations. Decomposition of a complex set of opioid users into homogeneous subgroups could enhance genetic analysis. We applied a series of data mining techniques, including multiple correspondence analysis, variable selection and cluster analysis, to 69 opioid-related measures from 5390 subjects aggregated from family-based and case-control genetic studies to identify homogeneous subtypes and estimate their heritability. Novel aspects of this work include our use of (1) heritability estimates of specific clinical features of OD to enhance the heritability of the subtypes and (2) a k-medoids clustering method in combination with hierarchical clustering to yield replicable clusters that are less sensitive to noise than previous methods. We identified five homogeneous groups, including two large groups comprised of 762 and 1353 heavy opioid users, with estimated heritability of 0.69 and 0.76, respectively. These methods represent a promising approach to the identification of highly heritable subtypes in complex, heterogeneous disorders.
虽然有证据表明阿片类药物依赖(OD)是可遗传的,但由于其复杂的病因和多变的临床表现,鉴定导致该疾病风险的基因的努力受到了阻碍。将一组复杂的阿片类药物使用者分解为同质亚组可以增强遗传分析。我们应用了一系列数据挖掘技术,包括多元对应分析、变量选择和聚类分析,对从基于家庭和病例对照遗传研究中汇总的 5390 名受试者的 69 种与阿片类药物相关的测量值进行分析,以确定同质亚型并估计其遗传性。这项工作的新颖之处包括我们使用(1)OD 的特定临床特征的遗传估计值来增强亚型的遗传性,以及(2)k-medoids 聚类方法与层次聚类相结合,产生比以前的方法更不容易受到噪声干扰的可复制聚类。我们确定了五个同质组,包括两个由 762 和 1353 名重度阿片类药物使用者组成的大组,遗传率分别为 0.69 和 0.76。这些方法代表了一种在复杂、异质疾病中识别高度遗传性亚型的有前途的方法。