Nanoworld Institute, Fondazione EL.B.A. Nicolini, Largo Redaelli 7, Pradalunga, Bergamo, Italy.
J Struct Biol. 2012 Oct;180(1):57-64. doi: 10.1016/j.jsb.2012.05.021. Epub 2012 Jun 15.
Langmuir-Blodgett films when used as nanotemplates for crystallization often leads to marked changes in protein stability and structure. Earlier we found that stability of proteins is also correlated with aqueous surroundings in the crystals. Here we study the direct relationships between presence of LB nanotemplates and unique patterns of water molecules surrounding the protein, for four model proteins for which 3D structures are available, and where crystallization conditions for each protein are the same except the presence of LB nanotemplate. Shape of frequency distribution of volumes occupied by water molecules were analyzed. They were found to be different between "classical" samples of different proteins, but surprisingly quite similar for LB samples. Volumes occupied by each water molecule as the function of the distance of the given molecule from the protein surface were studied. Introduction of LB film leads to appearance of water molecules close to protein surface but occupying large volumes. These findings confirm earlier experimental findings on the role of water molecules in determining protein stability and thereby pointing to water as a possible candidate for differences apparent in LB crystal stability against radiation.
当 Langmuir-Blodgett 膜被用作结晶的纳米模板时,通常会导致蛋白质稳定性和结构的显著变化。我们之前发现,蛋白质的稳定性也与晶体中的水环境有关。在这里,我们研究了 LB 纳米模板的存在与围绕蛋白质的水分子的独特模式之间的直接关系,对于四种具有 3D 结构的模型蛋白质,并且每种蛋白质的结晶条件相同,只是存在 LB 纳米模板。分析了水分子占据体积的频率分布形状。它们在不同“经典”蛋白质样本之间有所不同,但令人惊讶的是,LB 样本之间非常相似。研究了每个水分子占据的体积与给定分子距蛋白质表面的距离的函数关系。LB 膜的引入导致了靠近蛋白质表面但占据较大体积的水分子的出现。这些发现证实了先前关于水分子在确定蛋白质稳定性中的作用的实验发现,从而指出水可能是 LB 晶体稳定性对辐射差异的一个可能候选因素。