Suppr超能文献

溶液中腺苷单体的 N-H 伸缩振动模式的超快非线性红外光谱和从头算计算研究。

N-H stretching modes of adenosine monomer in solution studied by ultrafast nonlinear infrared spectroscopy and ab initio calculations.

机构信息

Max-Born-Institut für Nichtlineare Optik und Kurzzeitspektroskopie, Max-Born-Strasse 2 A, D-12489 Berlin, Germany.

出版信息

J Phys Chem A. 2012 Jul 26;116(29):7636-44. doi: 10.1021/jp303864m. Epub 2012 Jul 18.

Abstract

The N-H stretching vibrations of adenine, one of the building blocks of DNA, are studied by combining infrared absorption and nonlinear two-dimensional infrared spectroscopy with ab initio calculations. We determine diagonal and off-diagonal anharmonicities of N-H stretching vibrations in chemically modified adenosine monomer dissolved in chloroform. For the single-quantum excitation manifold, the normal mode picture with symmetric and asymmetric NH(2) stretching vibrations is fully appropriate. For the two-quantum excitation manifold, however, the interplay between intermode coupling and frequency shifts due to a large diagonal anharmonicity leads to a situation where strong mixing does not occur. We compare our findings with previously reported values obtained on overtone spectroscopy of coupled hydrogen stretching oscillators.

摘要

通过将红外吸收和非线性二维红外光谱与从头计算相结合,研究了 DNA 组成部分之一腺嘌呤的 N-H 伸缩振动。我们确定了溶解在氯仿中的化学修饰的腺苷单体内 N-H 伸缩振动的对角和非对角非谐性。对于单量子激发谱,具有对称和不对称 NH(2)伸缩振动的正则模式图像是完全合适的。然而,对于双量子激发谱,由于大的对角非谐性导致的模式间耦合和频率位移的相互作用导致强混合不会发生。我们将我们的发现与以前在耦合氢伸缩振荡器的倍频光谱学中报道的值进行了比较。

相似文献

3
Dynamics and couplings of N-H stretching excitations of guanosine-cytidine base pairs in solution.
J Phys Chem B. 2011 May 12;115(18):5484-92. doi: 10.1021/jp110561d. Epub 2011 Jan 18.
4
Near IR overtone spectral investigations of cyclohexanol using local mode model--evidence for variation of anharmonicity with concentration due to hydrogen bonding.
Spectrochim Acta A Mol Biomol Spectrosc. 2005 Sep;61(11-12):2555-9. doi: 10.1016/j.saa.2004.09.021. Epub 2004 Nov 21.
5
Characterizing Anharmonic Vibrational Modes of Quinones with Two-Dimensional Infrared Spectroscopy.
J Phys Chem B. 2015 Jul 23;119(29):8917-25. doi: 10.1021/jp506900n. Epub 2015 Mar 3.
6
Infrared spectroscopy of hydrogen-bonded CHCl3-SO2 in the gas phase.
J Chem Phys. 2006 Jun 7;124(21):214316. doi: 10.1063/1.2207617.
7
Anharmonicities and coherent vibrational dynamics of phosphate ions in bulk H2O.
Phys Chem Chem Phys. 2015 Nov 28;17(44):29906-17. doi: 10.1039/c5cp04502a. Epub 2015 Oct 21.
8
Two-dimensional infrared spectroscopy of intermolecular hydrogen bonds in the condensed phase.
Acc Chem Res. 2009 Sep 15;42(9):1220-8. doi: 10.1021/ar900006u.
9
N-H stretching vibrations of guanosine-cytidine base pairs in solution: ultrafast dynamics, couplings, and line shapes.
J Phys Chem A. 2013 Feb 7;117(5):845-54. doi: 10.1021/jp309237u. Epub 2013 Jan 29.

本文引用的文献

1
Scaling Factors and Uncertainties for ab Initio Anharmonic Vibrational Frequencies.
J Chem Theory Comput. 2010 Sep 14;6(9):2822-8. doi: 10.1021/ct100244d.
2
Decelerated water dynamics and vibrational couplings of hydrated DNA mapped by two-dimensional infrared spectroscopy.
J Phys Chem B. 2011 Nov 10;115(44):13093-100. doi: 10.1021/jp208166w. Epub 2011 Oct 18.
3
Anharmonic vibrational modes of nucleic acid bases revealed by 2D IR spectroscopy.
J Am Chem Soc. 2011 Oct 5;133(39):15650-60. doi: 10.1021/ja205636h. Epub 2011 Sep 12.
4
On the nature of OH-stretching vibrations in hydrogen-bonded chains: pump frequency dependent vibrational lifetime.
Phys Chem Chem Phys. 2011 Mar 14;13(10):4641-50. doi: 10.1039/c0cp02143a. Epub 2011 Jan 24.
5
Dynamics and couplings of N-H stretching excitations of guanosine-cytidine base pairs in solution.
J Phys Chem B. 2011 May 12;115(18):5484-92. doi: 10.1021/jp110561d. Epub 2011 Jan 18.
6
Femtosecond two-dimensional infrared spectroscopy of adenine-thymine base pairs in DNA oligomers.
J Phys Chem B. 2011 Feb 10;115(5):1262-7. doi: 10.1021/jp1090697. Epub 2011 Jan 10.
7
Infrared and Raman line shapes for ice Ih. I. Dilute HOD in H(2)O and D(2)O.
J Chem Phys. 2010 May 28;132(20):204505. doi: 10.1063/1.3430518.
8
Ultrafast vibrational dynamics and local interactions of hydrated DNA.
Angew Chem Int Ed Engl. 2010 May 10;49(21):3598-610. doi: 10.1002/anie.200905693.
9
Ultrashort fluorescence lifetimes of hydrogen-bonded base pairs of guanosine and cytidine in solution.
J Phys Chem B. 2009 Dec 24;113(51):16365-76. doi: 10.1021/jp904883n.
10
Dissimilar dynamics of coupled water vibrations.
J Phys Chem A. 2009 Jun 4;113(22):6260-5. doi: 10.1021/jp900480r.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验