• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

溶液中腺苷单体的 N-H 伸缩振动模式的超快非线性红外光谱和从头算计算研究。

N-H stretching modes of adenosine monomer in solution studied by ultrafast nonlinear infrared spectroscopy and ab initio calculations.

机构信息

Max-Born-Institut für Nichtlineare Optik und Kurzzeitspektroskopie, Max-Born-Strasse 2 A, D-12489 Berlin, Germany.

出版信息

J Phys Chem A. 2012 Jul 26;116(29):7636-44. doi: 10.1021/jp303864m. Epub 2012 Jul 18.

DOI:10.1021/jp303864m
PMID:22724894
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3441835/
Abstract

The N-H stretching vibrations of adenine, one of the building blocks of DNA, are studied by combining infrared absorption and nonlinear two-dimensional infrared spectroscopy with ab initio calculations. We determine diagonal and off-diagonal anharmonicities of N-H stretching vibrations in chemically modified adenosine monomer dissolved in chloroform. For the single-quantum excitation manifold, the normal mode picture with symmetric and asymmetric NH(2) stretching vibrations is fully appropriate. For the two-quantum excitation manifold, however, the interplay between intermode coupling and frequency shifts due to a large diagonal anharmonicity leads to a situation where strong mixing does not occur. We compare our findings with previously reported values obtained on overtone spectroscopy of coupled hydrogen stretching oscillators.

摘要

通过将红外吸收和非线性二维红外光谱与从头计算相结合,研究了 DNA 组成部分之一腺嘌呤的 N-H 伸缩振动。我们确定了溶解在氯仿中的化学修饰的腺苷单体内 N-H 伸缩振动的对角和非对角非谐性。对于单量子激发谱,具有对称和不对称 NH(2)伸缩振动的正则模式图像是完全合适的。然而,对于双量子激发谱,由于大的对角非谐性导致的模式间耦合和频率位移的相互作用导致强混合不会发生。我们将我们的发现与以前在耦合氢伸缩振荡器的倍频光谱学中报道的值进行了比较。

相似文献

1
N-H stretching modes of adenosine monomer in solution studied by ultrafast nonlinear infrared spectroscopy and ab initio calculations.溶液中腺苷单体的 N-H 伸缩振动模式的超快非线性红外光谱和从头算计算研究。
J Phys Chem A. 2012 Jul 26;116(29):7636-44. doi: 10.1021/jp303864m. Epub 2012 Jul 18.
2
N-H stretching excitations in adenosine-thymidine base pairs in solution: pair geometries, infrared line shapes, and ultrafast vibrational dynamics.溶液中腺苷-胸腺嘧啶碱基对中的 N-H 伸缩激发:碱基对几何形状、红外谱线形状和超快振动动力学。
J Phys Chem A. 2013 Jan 24;117(3):594-606. doi: 10.1021/jp310177e. Epub 2013 Jan 7.
3
Dynamics and couplings of N-H stretching excitations of guanosine-cytidine base pairs in solution.溶液中鸟嘌呤-胞嘧啶碱基对 N-H 伸缩激发的动力学和耦合。
J Phys Chem B. 2011 May 12;115(18):5484-92. doi: 10.1021/jp110561d. Epub 2011 Jan 18.
4
Near IR overtone spectral investigations of cyclohexanol using local mode model--evidence for variation of anharmonicity with concentration due to hydrogen bonding.使用局域模模型对环己醇进行近红外泛音光谱研究——氢键导致非谐性随浓度变化的证据
Spectrochim Acta A Mol Biomol Spectrosc. 2005 Sep;61(11-12):2555-9. doi: 10.1016/j.saa.2004.09.021. Epub 2004 Nov 21.
5
Characterizing Anharmonic Vibrational Modes of Quinones with Two-Dimensional Infrared Spectroscopy.用二维红外光谱表征醌的非谐振动模式
J Phys Chem B. 2015 Jul 23;119(29):8917-25. doi: 10.1021/jp506900n. Epub 2015 Mar 3.
6
Infrared spectroscopy of hydrogen-bonded CHCl3-SO2 in the gas phase.气相中氢键结合的CHCl₃ - SO₂的红外光谱
J Chem Phys. 2006 Jun 7;124(21):214316. doi: 10.1063/1.2207617.
7
Anharmonicities and coherent vibrational dynamics of phosphate ions in bulk H2O.本体水中磷酸根离子的非谐性与相干振动动力学
Phys Chem Chem Phys. 2015 Nov 28;17(44):29906-17. doi: 10.1039/c5cp04502a. Epub 2015 Oct 21.
8
Two-dimensional infrared spectroscopy of intermolecular hydrogen bonds in the condensed phase.凝聚相中介于分子氢键的二维红外光谱学
Acc Chem Res. 2009 Sep 15;42(9):1220-8. doi: 10.1021/ar900006u.
9
N-H stretching vibrations of guanosine-cytidine base pairs in solution: ultrafast dynamics, couplings, and line shapes.溶液中鸟苷-胞嘧啶碱基对的 N-H 伸缩振动:超快动力学、耦合和谱线形状。
J Phys Chem A. 2013 Feb 7;117(5):845-54. doi: 10.1021/jp309237u. Epub 2013 Jan 29.
10
Mode-selective vibrational redistribution after spectrally selective N-H stretching mode excitation in intermolecular hydrogen bonds.分子间氢键中光谱选择性N-H伸缩模式激发后的模式选择性振动再分布。
J Chem Phys. 2009 Jan 21;130(3):034505. doi: 10.1063/1.3062809.

引用本文的文献

1
Antibacterial Activity of Ulva/Nanocellulose and Ulva/Ag/Cellulose Nanocomposites and Both Blended with Fluoride against Bacteria Causing Dental Decay.石莼/纳米纤维素和石莼/银/纤维素纳米复合材料以及两者与氟化物混合对致龋细菌的抗菌活性。
Polymers (Basel). 2023 Feb 20;15(4):1047. doi: 10.3390/polym15041047.
2
Elucidating Conformation and Hydrogen-Bonding Motifs of Reactive Thiourea Intermediates.阐明反应性硫脲中间体的构象和氢键基序
ACS Catal. 2022 Oct 21;12(20):12689-12700. doi: 10.1021/acscatal.2c03382. Epub 2022 Oct 5.
3
Two New Fluorinated Phenol Derivatives Pyridine Schiff Bases: Synthesis, Spectral, Theoretical Characterization, Inclusion in Epichlorohydrin-β-Cyclodextrin Polymer, and Antifungal Effect.两种新型含氟苯酚衍生物吡啶席夫碱:合成、光谱、理论表征、包合于环氧氯丙烷-β-环糊精聚合物中及抗真菌作用
Front Chem. 2018 Jul 30;6:312. doi: 10.3389/fchem.2018.00312. eCollection 2018.
4
Applications of two-dimensional infrared spectroscopy.二维红外光谱学的应用
Analyst. 2015 Jul 7;140(13):4336-49. doi: 10.1039/c5an00558b.
5
N-H stretching excitations in adenosine-thymidine base pairs in solution: pair geometries, infrared line shapes, and ultrafast vibrational dynamics.溶液中腺苷-胸腺嘧啶碱基对中的 N-H 伸缩激发:碱基对几何形状、红外谱线形状和超快振动动力学。
J Phys Chem A. 2013 Jan 24;117(3):594-606. doi: 10.1021/jp310177e. Epub 2013 Jan 7.

本文引用的文献

1
Scaling Factors and Uncertainties for ab Initio Anharmonic Vibrational Frequencies.从头算非谐振动频率的标度因子和不确定性
J Chem Theory Comput. 2010 Sep 14;6(9):2822-8. doi: 10.1021/ct100244d.
2
Decelerated water dynamics and vibrational couplings of hydrated DNA mapped by two-dimensional infrared spectroscopy.二维红外光谱测绘水合 DNA 的减速水动力学和振动耦合。
J Phys Chem B. 2011 Nov 10;115(44):13093-100. doi: 10.1021/jp208166w. Epub 2011 Oct 18.
3
Anharmonic vibrational modes of nucleic acid bases revealed by 2D IR spectroscopy.二维红外光谱揭示的核酸碱基的非谐振动模式。
J Am Chem Soc. 2011 Oct 5;133(39):15650-60. doi: 10.1021/ja205636h. Epub 2011 Sep 12.
4
On the nature of OH-stretching vibrations in hydrogen-bonded chains: pump frequency dependent vibrational lifetime.氢键链中 OH 伸缩振动的本质:泵浦频率相关的振动寿命。
Phys Chem Chem Phys. 2011 Mar 14;13(10):4641-50. doi: 10.1039/c0cp02143a. Epub 2011 Jan 24.
5
Dynamics and couplings of N-H stretching excitations of guanosine-cytidine base pairs in solution.溶液中鸟嘌呤-胞嘧啶碱基对 N-H 伸缩激发的动力学和耦合。
J Phys Chem B. 2011 May 12;115(18):5484-92. doi: 10.1021/jp110561d. Epub 2011 Jan 18.
6
Femtosecond two-dimensional infrared spectroscopy of adenine-thymine base pairs in DNA oligomers.DNA 寡聚体中腺嘌呤-胸腺嘧啶碱基对的飞秒二维红外光谱。
J Phys Chem B. 2011 Feb 10;115(5):1262-7. doi: 10.1021/jp1090697. Epub 2011 Jan 10.
7
Infrared and Raman line shapes for ice Ih. I. Dilute HOD in H(2)O and D(2)O.冰 Ih 的红外和拉曼线形状。I. 在 H(2)O 和 D(2)O 中稀释 HOD。
J Chem Phys. 2010 May 28;132(20):204505. doi: 10.1063/1.3430518.
8
Ultrafast vibrational dynamics and local interactions of hydrated DNA.水合 DNA 的超快振动动力学和局域相互作用。
Angew Chem Int Ed Engl. 2010 May 10;49(21):3598-610. doi: 10.1002/anie.200905693.
9
Ultrashort fluorescence lifetimes of hydrogen-bonded base pairs of guanosine and cytidine in solution.溶液中氢键结合的鸟嘌呤和胞嘧啶碱基对的超短荧光寿命。
J Phys Chem B. 2009 Dec 24;113(51):16365-76. doi: 10.1021/jp904883n.
10
Dissimilar dynamics of coupled water vibrations.耦合水振动的不同动力学特性
J Phys Chem A. 2009 Jun 4;113(22):6260-5. doi: 10.1021/jp900480r.