Department of Neurology, University Hospital Schleswig-Holstein, Kiel, Germany.
Neurology. 2012 Jul 17;79(3):243-8. doi: 10.1212/WNL.0b013e31825fdeed. Epub 2012 Jul 3.
Sporadic, genetically complex essential tremor (ET) is one of the most common movement disorders and may lead to severe impairment of the quality of life. Despite high heritability, the genetic determinants of ET are largely unknown. We performed the second genome-wide association study (GWAS) for ET to elucidate genetic risk factors of ET.
Using the Affymetrix Genome-Wide SNP Array 6.0 (1000K) we conducted a two-stage GWAS in a total of 990 subjects and 1,537 control subjects from Europe to identify genetic variants associated with ET.
We discovered association of an intronic variant of the main glial glutamate transporter (SLC1A2) gene with ET in the first-stage sample (rs3794087, p = 6.95 × 10(-5), odds ratio [OR] = 1.46). We verified the association of rs3794087 with ET in a second-stage sample (p = 1.25 × 10(-3), OR = 1.38). In the subgroup analysis of patients classified as definite ET, rs3794087 obtained genome-wide significance (p = 3.44 × 10(-10), OR = 1.59) in the combined first- and second-stage sample. Genetic fine mapping using nonsynonymous single nucleotide polymorphisms (SNPs) and SNPs in high linkage disequilibrium with rs3794087 did not reveal any SNP with a stronger association with ET than rs3794087.
We identified SLC1A2 encoding the major glial high-affinity glutamate reuptake transporter in the brain as a potential ET susceptibility gene. Acute and chronic glutamatergic overexcitation is implied in the pathogenesis of ET. SLC1A2 is therefore a good functional candidate gene for ET.
散发性、遗传复杂的原发性震颤(essential tremor,ET)是最常见的运动障碍之一,可能导致生活质量严重受损。尽管遗传率很高,但 ET 的遗传决定因素在很大程度上仍是未知的。我们进行了第二次 ET 的全基因组关联研究(GWAS),以阐明 ET 的遗传风险因素。
使用 Affymetrix 全基因组 SNP 阵列 6.0(1000K),我们在欧洲的 990 名患者和 1537 名对照者中进行了两阶段 GWAS,以确定与 ET 相关的遗传变异。
我们发现,主要胶质谷氨酸转运体(SLC1A2)基因的内含子变异与第一阶段样本中的 ET 相关(rs3794087,p=6.95×10(-5),优势比[OR]=1.46)。我们在第二阶段样本中验证了 rs3794087 与 ET 的关联(p=1.25×10(-3),OR=1.38)。在根据明确 ET 患者进行的亚组分析中,rs3794087 在合并的第一和第二阶段样本中获得了全基因组显著性(p=3.44×10(-10),OR=1.59)。使用非同义单核苷酸多态性(SNPs)和与 rs3794087 高度连锁不平衡的 SNPs 进行遗传精细作图,没有发现任何与 ET 相关性比 rs3794087 更强的 SNP。
我们确定了大脑中主要的胶质高亲和力谷氨酸摄取转运体 SLC1A2 编码为潜在的 ET 易感性基因。急性和慢性谷氨酸能过度兴奋被暗示在 ET 的发病机制中。因此,SLC1A2 是 ET 的一个很好的功能候选基因。