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从湿地淡水中分离得到的新种 Rigui 鞘氨醇单胞菌(Sphingopyxis rigui sp. nov.)和 Wooponensis 鞘氨醇单胞菌(Sphingopyxis wooponensis sp. nov.),并对鞘氨醇单胞菌属的描述进行了修正。

Sphingopyxis rigui sp. nov. and Sphingopyxis wooponensis sp. nov., isolated from wetland freshwater, and emended description of the genus Sphingopyxis.

机构信息

Department of Biology, College of Life Science and Natural Resources, Sunchon National University, Suncheon 540-742, Republic of Korea.

Department of Dental Hygiene, Gwangju Health College, Gwangju 506-701, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2013 Apr;63(Pt 4):1297-1303. doi: 10.1099/ijs.0.044057-0. Epub 2012 Jul 13.

Abstract

Two yellow-pigmented, Gram-reaction-negative strains, designated 01SU5-P(T) and 03SU3-P(T), were isolated from the freshwater of Woopo wetland, Republic of Korea. Both strains were aerobic, non-motile and catalase-negative. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the two isolates belong to the genus Sphingopyxis, showing the highest level of sequence similarity with respect to Sphingopyxis witflariensis W-50(T) (95.4-95.7 %). The two novel isolates shared 99.4 % sequence similarity. DNA-DNA hybridization between the isolates and the type strain of S. witflariensis clearly suggested that strains 01SU5-P(T) and 03SU3-P(T) represent two separate novel species in the genus Sphingopyxis. The two strains displayed different fingerprints after PCR analysis using the repetitive primers BOX, ERIC and REP. Several phenotypic characteristics served to differentiate these two isolates from recognized members of the genus Sphingopyxis. The data from the polyphasic study presented here indicated that strains 01SU5-P(T) and 03SU3-P(T) should be classified as representing novel species in the genus Sphingopyxis, for which the names Sphingopyxis rigui sp. nov. and Sphingopyxis wooponensis sp. nov., respectively, are proposed. The type strain of Sphingopyxis rigui sp. nov. is 01SU5-P(T) ( = KCTC 23326(T) = JCM 17509(T)) and the type strain of Sphingopyxis wooponensis sp. nov. is 03SU3-P(T) ( = KCTC 23340(T) = JCM 17547(T)).

摘要

两株黄色、革兰氏反应阴性的菌株,分别命名为 01SU5-P(T) 和 03SU3-P(T),从韩国 Woopo 湿地的淡水中分离得到。两株菌均为需氧、非运动和过氧化氢酶阴性。基于 16S rRNA 基因序列的系统发育分析表明,这两株分离物属于鞘氨醇单胞菌属,与 Sphingopyxis witflariensis W-50(T) 的序列相似性最高(95.4-95.7%)。两株新分离株的序列相似性为 99.4%。两株分离株与 Sphingopyxis witflariensis 模式株之间的 DNA-DNA 杂交清楚地表明,菌株 01SU5-P(T) 和 03SU3-P(T) 代表鞘氨醇单胞菌属中的两个独立的新种。这两株菌在使用重复引物 BOX、ERIC 和 REP 进行 PCR 分析后显示出不同的指纹图谱。一些表型特征可将这两个分离株与鞘氨醇单胞菌属中已鉴定的成员区分开来。多相研究的数据表明,菌株 01SU5-P(T) 和 03SU3-P(T) 应归类为鞘氨醇单胞菌属中的新种,分别命名为 Sphingopyxis rigui sp. nov. 和 Sphingopyxis wooponensis sp. nov.。Sphingopyxis rigui sp. nov. 的模式株为 01SU5-P(T)( = KCTC 23326(T) = JCM 17509(T)),Sphingopyxis wooponensis sp. nov. 的模式株为 03SU3-P(T)( = KCTC 23340(T) = JCM 17547(T))。

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