Center for Geomicrobiology, Department of Bioscience, Aarhus University, Aarhus, Denmark.
ISME J. 2013 Jan;7(1):72-84. doi: 10.1038/ismej.2012.83. Epub 2012 Jul 26.
Patterns of microbial biogeography result from a combination of dispersal, speciation and extinction, yet individual contributions exerted by each of these mechanisms are difficult to isolate and distinguish. The influx of endospores of thermophilic microorganisms to cold marine sediments offers a natural model for investigating passive dispersal in the ocean. We investigated the activity, diversity and abundance of thermophilic endospore-forming sulfate-reducing bacteria (SRB) in Aarhus Bay by incubating pasteurized sediment between 28 and 85 °C, and by subsequent molecular diversity analyses of 16S rRNA and of the dissimilatory (bi)sulfite reductase (dsrAB) genes within the endospore-forming SRB genus Desulfotomaculum. The thermophilic Desulfotomaculum community in Aarhus Bay sediments consisted of at least 23 species-level 16S rRNA sequence phylotypes. In two cases, pairs of identical 16S rRNA and dsrAB sequences in Arctic surface sediment 3000 km away showed that the same phylotypes are present in both locations. Radiotracer-enhanced most probable number analysis revealed that the abundance of endospores of thermophilic SRB in Aarhus Bay sediment was ca. 10(4) per cm(3) at the surface and decreased exponentially to 10(0) per cm(3) at 6.5 m depth, corresponding to 4500 years of sediment age. Thus, a half-life of ca. 300 years was estimated for the thermophilic SRB endospores deposited in Aarhus Bay sediments. These endospores were similarly detected in the overlying water column, indicative of passive dispersal in water masses preceding sedimentation. The sources of these thermophiles remain enigmatic, but at least one source may be common to both Aarhus Bay and Arctic sediments.
微生物生物地理学模式是由扩散、物种形成和灭绝共同作用的结果,但这些机制各自的贡献很难分离和区分。嗜热微生物内生孢子的涌入为研究海洋中的被动扩散提供了一个自然模型。我们通过在 28 至 85°C 之间孵育巴氏消毒的沉积物,以及随后对形成内生孢子的硫酸盐还原菌(Desulfotomaculum 属)的 16S rRNA 和异化(双)亚硫酸盐还原酶(dsrAB)基因进行分子多样性分析,研究了奥胡斯湾沉积物中嗜热内生孢子形成硫酸盐还原菌的活性、多样性和丰度。奥胡斯湾沉积物中的嗜热 Desulfotomaculum 群落至少由 23 种 16S rRNA 序列系统发育型组成。在两种情况下,相距 3000 公里的北极表层沉积物中相同的 16S rRNA 和 dsrAB 序列表明,相同的系统发育型存在于两个地点。放射性示踪剂增强最可能数分析表明,奥胡斯湾沉积物中嗜热 SRB 内生孢子的丰度在表层约为 10(4)个/cm(3),并以 6.5m 深度处的 10(0)个/cm(3)呈指数下降,相当于 4500 年的沉积物年龄。因此,估计在奥胡斯湾沉积物中沉积的嗜热 SRB 内生孢子的半衰期约为 300 年。这些内生孢子也在覆盖的水柱中被检测到,表明在沉降之前的水团中有被动扩散。这些嗜热微生物的来源仍然是个谜,但至少有一个来源可能在奥胡斯湾和北极沉积物中都有。