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Microbial scout hypothesis and microbial discovery.微生物侦察假说与微生物发现。
Appl Environ Microbiol. 2012 May;78(9):3229-33. doi: 10.1128/AEM.07308-11. Epub 2012 Feb 24.
2
Microbial scout hypothesis, stochastic exit from dormancy, and the nature of slow growers.微生物侦察假说、随机休眠退出和缓慢生长菌的本质。
Appl Environ Microbiol. 2012 May;78(9):3221-8. doi: 10.1128/AEM.07307-11. Epub 2012 Feb 24.
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Evidence of biogeography in surface ocean bacterioplankton assemblages.表层海洋浮游细菌群落的生物地理学证据。
Mar Genomics. 2008 Jun;1(2):55-61. doi: 10.1016/j.margen.2008.06.005. Epub 2008 Sep 13.
4
Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions.在异养条件下,丹麦奥胡斯湾扩散控制沉积物硫酸盐-甲烷转换带相关的原核生物的富集和培养。
FEMS Microbiol Ecol. 2011 Aug;77(2):248-63. doi: 10.1111/j.1574-6941.2011.01109.x. Epub 2011 May 9.
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Global patterns in the biogeography of bacterial taxa.细菌分类群生物地理学的全球格局。
Environ Microbiol. 2011 Jan;13(1):135-144. doi: 10.1111/j.1462-2920.2010.02315.x.
6
Microbial provinces in the subseafloor.地下深处的微生物区系。
Ann Rev Mar Sci. 2010;2:279-304. doi: 10.1146/annurev-marine-120308-081000.
7
Thermophilic anaerobes in Arctic marine sediments induced to mineralize complex organic matter at high temperature.高温诱导北极海洋沉积物中嗜热厌氧菌矿化复杂有机物。
Environ Microbiol. 2010 Apr;12(4):1089-104. doi: 10.1111/j.1462-2920.2010.02161.x. Epub 2010 Feb 18.
8
Biogeography of thermophilic cyanobacteria: insights from the Zerka Ma'in hot springs (Jordan).嗜热蓝细菌的生物地理学:来自泽卡迈因温泉(约旦)的启示。
FEMS Microbiol Ecol. 2010 Apr;72(1):103-13. doi: 10.1111/j.1574-6941.2010.00835.x. Epub 2010 Jan 19.
9
Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean.南大西洋深海表层沉积物中的细菌多样性及其生物地理学分布。
ISME J. 2010 Feb;4(2):159-70. doi: 10.1038/ismej.2009.106. Epub 2009 Oct 15.
10
Prokaryotic community structure and sulfate reducer activity in water from high-temperature oil reservoirs with and without nitrate treatment.高温油藏中添加硝酸盐和不添加硝酸盐条件下水中的原核生物群落结构和硫酸盐还原菌活性。
Appl Environ Microbiol. 2009 Nov;75(22):7086-96. doi: 10.1128/AEM.01123-09. Epub 2009 Oct 2.

几千年来嗜热脱硫梭菌芽孢在波罗的海沉积物中的扩散。

Dispersal of thermophilic Desulfotomaculum endospores into Baltic Sea sediments over thousands of years.

机构信息

Center for Geomicrobiology, Department of Bioscience, Aarhus University, Aarhus, Denmark.

出版信息

ISME J. 2013 Jan;7(1):72-84. doi: 10.1038/ismej.2012.83. Epub 2012 Jul 26.

DOI:10.1038/ismej.2012.83
PMID:22832348
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3524260/
Abstract

Patterns of microbial biogeography result from a combination of dispersal, speciation and extinction, yet individual contributions exerted by each of these mechanisms are difficult to isolate and distinguish. The influx of endospores of thermophilic microorganisms to cold marine sediments offers a natural model for investigating passive dispersal in the ocean. We investigated the activity, diversity and abundance of thermophilic endospore-forming sulfate-reducing bacteria (SRB) in Aarhus Bay by incubating pasteurized sediment between 28 and 85 °C, and by subsequent molecular diversity analyses of 16S rRNA and of the dissimilatory (bi)sulfite reductase (dsrAB) genes within the endospore-forming SRB genus Desulfotomaculum. The thermophilic Desulfotomaculum community in Aarhus Bay sediments consisted of at least 23 species-level 16S rRNA sequence phylotypes. In two cases, pairs of identical 16S rRNA and dsrAB sequences in Arctic surface sediment 3000 km away showed that the same phylotypes are present in both locations. Radiotracer-enhanced most probable number analysis revealed that the abundance of endospores of thermophilic SRB in Aarhus Bay sediment was ca. 10(4) per cm(3) at the surface and decreased exponentially to 10(0) per cm(3) at 6.5 m depth, corresponding to 4500 years of sediment age. Thus, a half-life of ca. 300 years was estimated for the thermophilic SRB endospores deposited in Aarhus Bay sediments. These endospores were similarly detected in the overlying water column, indicative of passive dispersal in water masses preceding sedimentation. The sources of these thermophiles remain enigmatic, but at least one source may be common to both Aarhus Bay and Arctic sediments.

摘要

微生物生物地理学模式是由扩散、物种形成和灭绝共同作用的结果,但这些机制各自的贡献很难分离和区分。嗜热微生物内生孢子的涌入为研究海洋中的被动扩散提供了一个自然模型。我们通过在 28 至 85°C 之间孵育巴氏消毒的沉积物,以及随后对形成内生孢子的硫酸盐还原菌(Desulfotomaculum 属)的 16S rRNA 和异化(双)亚硫酸盐还原酶(dsrAB)基因进行分子多样性分析,研究了奥胡斯湾沉积物中嗜热内生孢子形成硫酸盐还原菌的活性、多样性和丰度。奥胡斯湾沉积物中的嗜热 Desulfotomaculum 群落至少由 23 种 16S rRNA 序列系统发育型组成。在两种情况下,相距 3000 公里的北极表层沉积物中相同的 16S rRNA 和 dsrAB 序列表明,相同的系统发育型存在于两个地点。放射性示踪剂增强最可能数分析表明,奥胡斯湾沉积物中嗜热 SRB 内生孢子的丰度在表层约为 10(4)个/cm(3),并以 6.5m 深度处的 10(0)个/cm(3)呈指数下降,相当于 4500 年的沉积物年龄。因此,估计在奥胡斯湾沉积物中沉积的嗜热 SRB 内生孢子的半衰期约为 300 年。这些内生孢子也在覆盖的水柱中被检测到,表明在沉降之前的水团中有被动扩散。这些嗜热微生物的来源仍然是个谜,但至少有一个来源可能在奥胡斯湾和北极沉积物中都有。