氧化葡萄糖酸杆菌 WSH-003 菌株的基因组草图，该菌株对糖和糖醇具有极强的耐受性。
Draft genome sequence of Gluconobacter oxydans WSH-003, a strain that is extremely tolerant of saccharides and alditols.
机构信息
State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, China.
出版信息
J Bacteriol. 2012 Aug;194(16):4455-6. doi: 10.1128/JB.00837-12.
Abstract
Gluconobacter oxydans is known for its incomplete oxidation of a wide range of alcohols, sugars, and acids in a bioprocess. The corresponding oxidation products are secreted almost completely into the medium. Here, we present the high-quality draft genome sequence of G. oxydans WSH-003, an industrial strain with both high l-sorbose productivity and extreme tolerance to saccharides and alditols.
摘要
众所周知，氧化葡萄糖酸杆菌能够在生物过程中不完全氧化多种醇类、糖类和酸类。相应的氧化产物几乎完全分泌到培养基中。在这里，我们呈现了具有高产 l-山梨糖和对糖和糖醇极高耐受性的工业菌株 G. oxydans WSH-003 的高质量基因组草图序列。
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本文引用的文献
1
De novo assembly of human genomes with massively parallel short read sequencing.
Genome Res. 2010 Feb;20(2):265-72. doi: 10.1101/gr.097261.109. Epub 2009 Dec 17.
2
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
3
Identifying bacterial genes and endosymbiont DNA with Glimmer.
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
4
Genome sequencing in microfabricated high-density picolitre reactors.
Nature. 2005 Sep 15;437(7057):376-80. doi: 10.1038/nature03959. Epub 2005 Jul 31.
5
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W686-9. doi: 10.1093/nar/gki366.
6
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W451-4. doi: 10.1093/nar/gki487.
7
Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans.
Nat Biotechnol. 2005 Feb;23(2):195-200. doi: 10.1038/nbt1062. Epub 2005 Jan 23.
8
The KEGG resource for deciphering the genome.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D277-80. doi: 10.1093/nar/gkh063.
9
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
Nucleic Acids Res. 2003 Jan 1;31(1):365-70. doi: 10.1093/nar/gkg095.
10
Biochemistry and biotechnological applications of Gluconobacter strains.
Appl Microbiol Biotechnol. 2002 Nov;60(3):233-42. doi: 10.1007/s00253-002-1114-5. Epub 2002 Oct 12.
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