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芽孢杆菌 pXO1 质粒 FtsZ/微管蛋白样蛋白 TubZ 的丝状体形成。

Filament formation of the FtsZ/tubulin-like protein TubZ from the Bacillus cereus pXO1 plasmid.

机构信息

Department of Supramolecular Biology, Graduate School of Nanobioscience, Yokohama City University, 1-7-29 Suehiro, Tsurumi, Yokohama 230-0045, Japan.

出版信息

J Biol Chem. 2012 Sep 14;287(38):32103-12. doi: 10.1074/jbc.M112.373803. Epub 2012 Jul 30.

Abstract

Stable maintenance of low-copy-number plasmids requires partition (par) systems that consist of a nucleotide hydrolase, a DNA-binding protein, and a cis-acting DNA-binding site. The FtsZ/tubulin-like GTPase TubZ was identified as a partitioning factor of the virulence plasmids pBtoxis and pXO1 in Bacillus thuringiensis and Bacillus anthracis, respectively. TubZ exhibits high GTPase activity and assembles into polymers both in vivo and in vitro, and its "treadmilling" movement is required for plasmid stability in the cell. To investigate the molecular mechanism of pXO1 plasmid segregation by TubZ filaments, we determined the crystal structures of Bacillus cereus TubZ in apo-, GDP-, and guanosine 5'-3-O-(thio)triphosphate (GTPγS)-bound forms at resolutions of 2.1, 1.9, and 3.3 Å, respectively. Interestingly, the slowly hydrolyzable GTP analog GTPγS was hydrolyzed to GDP in the crystal. In the post-GTP hydrolysis state, GDP-bound B. cereus TubZ forms a dimer by the head-to-tail association of individual subunits in the asymmetric unit, which is similar to the protofilament formation of FtsZ and B. thuringiensis TubZ. However, the M loop interacts with the nucleotide-binding site of the adjacent subunit and stabilizes the filament structure in a different manner, which indicates that the molecular assembly of the TubZ-related par systems is not stringently conserved. Furthermore, we show that the C-terminal tail of TubZ is required for association with the DNA-binding protein TubR. Using a combination of crystallography, site-directed mutagenesis, and biochemical analysis, our results provide the structural basis of the TubZ polymer that may drive DNA segregation.

摘要

稳定维持低拷贝数质粒需要分区(par)系统,该系统由核苷酸水解酶、DNA 结合蛋白和顺式作用 DNA 结合位点组成。FtsZ/微管样 GTP 酶 TubZ 被鉴定为苏云金芽孢杆菌和炭疽芽孢杆菌中毒力质粒 pBtoxis 和 pXO1 的分配因子。TubZ 表现出高 GTPase 活性,并在体内和体外均组装成聚合物,其“履带式”运动是质粒在细胞中稳定所必需的。为了研究 TubZ 纤维对 pXO1 质粒分离的分子机制,我们分别以 2.1、1.9 和 3.3Å 的分辨率测定了无辅因子、GDP 和鸟苷 5'-3-O-(硫代)三磷酸(GTPγS)结合形式的蜡状芽孢杆菌 TubZ 的晶体结构。有趣的是,在晶体中,缓慢水解的 GTP 类似物 GTPγS 被水解为 GDP。在后 GTP 水解状态下,GDP 结合的 B. cereus TubZ 通过单体在不对称单元中的头对头缔合形成二聚体,类似于 FtsZ 和 B. thuringiensis TubZ 的原纤维形成。然而,M 环与相邻亚基的核苷酸结合位点相互作用,并以不同的方式稳定纤维结构,这表明 TubZ 相关 par 系统的分子组装并非严格保守。此外,我们表明 TubZ 的 C 端尾部是与 DNA 结合蛋白 TubR 结合所必需的。通过晶体学、定点突变和生化分析相结合,我们的结果提供了 TubZ 聚合物的结构基础,该聚合物可能驱动 DNA 分离。

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