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来自非洲和马达加斯加的三种离褶伞属物种的隔离种群之间的遗传分歧。

Genetic divergence among disjunct populations of three Russula spp. from Africa and Madagascar.

机构信息

Department of Botany, University of Wyoming, Laramie, WY, USA.

出版信息

Mycologia. 2013 Jan-Feb;105(1):80-9. doi: 10.3852/11-067. Epub 2012 Aug 14.

Abstract

This study was a preliminary analysis of the genetic structure of the ectomycorrhizal species Russula discopus, R. pseudocarmecina and R. ochraceorivulosa with disjunct distributions in continental Africa and Madagascar. Phylogenetic analyses of the nuclear ITS1/5.8S/ITS2 region and the mitochondrial atp6 gene were performed with specimens from both locations for each species along with a suitable outgroup for each of the three taxa. Additional analyses of the ITS1/5.8S/ITS2 region using the African and Malagasy specimens and additional taxa in the genus Russula also were performed. R. pseudocarmecina and R. discopus both exhibited genetic structure as shown by a relatively high percentage difference in ITS and atp6 sequences, high bootstrap support for African or Malagasy groups and the presence of indels in the ITS sequence that are unique to either Africa or Madagascar. African and Malagasy groups of each species were more closely related to each other than to other taxa in Russula. Genetic structure also existed in populations of R. ochraceorivulosa, but bootstrap support was weaker than in the other two species. In addition, there was less sequence divergence in R. ochraceorivulosa and this species was the only one for which the same atp6 haplotype was found in both Africa and Madagascar. Reciprocal monophyly for all three species was consistent with the hypothesis that the same vicariance event may be responsible for the genetic structure observed here, although shorter branch lengths, lower bootstrap support and the presence of the same atp6 haplotype in Africa and Madagascar for R. ochraceorivulosa suggested slower evolutionary rates or geographical isolation after the other two taxa. In addition to the geological events that separated Africa and Madagascar, environmental changes during the Miocene or later might have had an effect on the distribution of these species.

摘要

本研究初步分析了外生菌根物种 Russula discopus、R. pseudocarmecina 和 R. ochraceorivulosa 的遗传结构,这些物种在非洲大陆和马达加斯加的分布是不连续的。对来自每个物种的非洲和马达加斯加分体的核 ITS1/5.8S/ITS2 区域和线粒体 atp6 基因进行了系统发育分析,并为每个分类群选择了合适的外群。还对非洲和马达加斯加标本以及 Russula 属中的其他分类群的 ITS1/5.8S/ITS2 区域进行了额外的分析。R. pseudocarmecina 和 R. discopus 都表现出遗传结构,表现在 ITS 和 atp6 序列的相对高百分比差异、非洲或马达加斯加群体的高自举支持以及 ITS 序列中存在仅在非洲或马达加斯加特有的插入缺失。每个物种的非洲和马达加斯加群体彼此之间的亲缘关系比 Russula 属中的其他分类群更为密切。R. ochraceorivulosa 的种群也存在遗传结构,但自举支持比其他两个物种弱。此外,R. ochraceorivulosa 的序列差异较小,而且该物种是唯一一个在非洲和马达加斯加都发现相同 atp6 单倍型的物种。所有三个物种的相互单系性与这样一种假设一致,即相同的隔离事件可能导致这里观察到的遗传结构,尽管 R. ochraceorivulosa 的分支长度较短、自举支持较低,以及非洲和马达加斯加的 atp6 单倍型相同,表明在其他两个分类群之后,进化速度较慢或地理隔离。除了将非洲和马达加斯加分开的地质事件外,中新世或之后的环境变化可能对这些物种的分布产生了影响。

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