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远程互联网访问高级分析设备:基于网络服务的新方法。

Remote Internet access to advanced analytical facilities: a new approach with Web-based services.

机构信息

Faculty of Science, The University of Western Ontario, London, ON, Canada.

出版信息

Anal Chem. 2012 Sep 4;84(17):7283-91. doi: 10.1021/ac301513b. Epub 2012 Aug 23.

Abstract

Over the past decade, the increasing availability of the World Wide Web has held out the possibility that the efficiency of scientific measurements could be enhanced in cases where experiments were being conducted at distant facilities. Examples of early successes have included X-ray diffraction (XRD) experimental measurements of protein crystal structures at synchrotrons and access to scanning electron microscopy (SEM) and NMR facilities by users from institutions that do not possess such advanced capabilities. Experimental control, visual contact, and receipt of results has used some form of X forwarding and/or VNC (virtual network computing) software that transfers the screen image of a server at the experimental site to that of the users' home site. A more recent development is a web services platform called Science Studio that provides teams of scientists with secure links to experiments at one or more advanced research facilities. The software provides a widely distributed team with a set of controls and screens to operate, observe, and record essential parts of the experiment. As well, Science Studio provides high speed network access to computing resources to process the large data sets that are often involved in complex experiments. The simple web browser and the rapid transfer of experimental data to a processing site allow efficient use of the facility and assist decision making during the acquisition of the experimental results. The software provides users with a comprehensive overview and record of all parts of the experimental process. A prototype network is described involving X-ray beamlines at two different synchrotrons and an SEM facility. An online parallel processing facility has been developed that analyzes the data in near-real time using stream processing. Science Studio and can be expanded to include many other analytical applications, providing teams of users with rapid access to processed results along with the means for detailed discussion of their significance.

摘要

在过去的十年中,随着万维网的普及,人们越来越有可能在实验在远程设施中进行的情况下提高科学测量的效率。早期成功的例子包括在同步加速器上对蛋白质晶体结构进行 X 射线衍射(XRD)实验测量,以及用户可以访问不具备这些先进功能的机构的扫描电子显微镜(SEM)和 NMR 设施。实验控制、视觉接触和接收结果使用了某种形式的 X 转发和/或 VNC(虚拟网络计算)软件,该软件将实验现场服务器的屏幕图像传输到用户的本地站点。最近的一个发展是一个名为 Science Studio 的 Web 服务平台,它为科学家团队提供了安全链接,可访问一个或多个先进研究设施的实验。该软件为分布式广泛的团队提供了一组控件和屏幕,用于操作、观察和记录实验的重要部分。此外,Science Studio 还为处理资源提供高速网络访问,以处理复杂实验中经常涉及的大型数据集。简单的网络浏览器和将实验数据快速传输到处理站点,可以有效地利用设施,并在获取实验结果时协助决策。该软件为用户提供了实验过程所有部分的全面概述和记录。描述了一个涉及两个不同同步加速器的 X 射线光束线和 SEM 设施的原型网络。已经开发了一个在线并行处理设施,该设施使用流处理近乎实时地分析数据。Science Studio 可以扩展到包括许多其他分析应用程序,为用户团队提供对处理结果的快速访问,并提供详细讨论其意义的手段。

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