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Hirschia litorea sp. nov.,从海滨沉积物中分离得到,对 Hirschia 属的描述进行了修正。

Hirschia litorea sp. nov., isolated from seashore sediment, and emended description of the genus Hirschia.

机构信息

Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2013 May;63(Pt 5):1684-1689. doi: 10.1099/ijs.0.044297-0. Epub 2012 Aug 17.

Abstract

A Gram-negative, non-spore-forming, non-flagellated, coccoid-, oval- or rod-shaped strain, designated M-M23(T), was isolated from seashore sediment at Geoje island, South Korea. Strain M-M23(T) grew optimally at 25 °C, at pH 7.0-8.0 and in the presence of 2 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain M-M23(T) clustered with the type strains of the two species of the genus Hirschia, with which it exhibited 97.6-98.1 % 16S rRNA gene sequence similarity. Sequence similarity with the type strains of other recognized species was <90.8 %. Strain M-M23(T) contained Q-10 as the predominant ubiquinone and C18 : 1ω7c and C16 : 0 as the major fatty acids. The major polar lipids of strain M-M23(T) were phosphatidylglycerol and two unidentified lipids. The DNA G+C content of strain M-M23(T) was 45.4 mol%. DNA-DNA relatedness between the isolate and Hirschia baltica DSM 5838(T) and Hirschia maritima JCM 14974(T) was 22±7.2 and 14±5.6 %, respectively. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain M-M23(T) is separate from the other described members of the genus Hirschia. On the basis of the data presented, strain M-M23(T) is considered to represent a novel species of the genus Hirschia, for which the name Hirschia litorea sp. nov. is proposed. The type strain is M-M23(T) ( = KCTC 32081(T)  = CCUG 62793(T)). An emended description of the genus Hirschia is also provided.

摘要

一株革兰氏阴性、非孢子形成、无鞭毛、球形、椭圆形或杆状的菌株,被命名为 M-M23(T),从韩国巨济岛的海滨沉积物中分离得到。菌株 M-M23(T) 在 25°C、pH 值 7.0-8.0 和 2%(w/v)NaCl 存在的条件下生长最佳。基于 16S rRNA 基因序列的系统发育树表明,菌株 M-M23(T)与 Hirschia 属的两个种的模式菌株聚类,与它们的 16S rRNA 基因序列相似性为 97.6-98.1%。与其他公认种的模式菌株的序列相似性<90.8%。菌株 M-M23(T)含有 Q-10 作为主要的泛醌和 C18 : 1ω7c 和 C16 : 0 作为主要的脂肪酸。菌株 M-M23(T)的主要极性脂是磷脂酰甘油和两种未鉴定的脂。菌株 M-M23(T)的 DNA G+C 含量为 45.4 mol%。分离株与 Hirschia baltica DSM 5838(T)和 Hirschia maritima JCM 14974(T)之间的 DNA-DNA 同源性分别为 22±7.2%和 14±5.6%。表型特征的差异,以及系统发育和遗传上的独特性,表明菌株 M-M23(T)与 Hirschia 属的其他已描述成员不同。基于所提供的数据,菌株 M-M23(T)被认为代表 Hirschia 属的一个新种,建议将其命名为 Hirschia litorea sp. nov.。模式菌株为 M-M23(T)( = KCTC 32081(T)  = CCUG 62793(T))。还提供了 Hirschia 属的修订描述。

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