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食凝胶多糖西米杜菌新种,一种从海洋与淡水泉交界处分离出的可降解凝胶多糖的细菌,以及西米杜菌属的修订描述。

Simiduia curdlanivorans sp. nov., a curdlan-degrading bacterium isolated from the junction between the ocean and a freshwater spring, and emended description of the genus Simiduia.

作者信息

Park Sooyeon, Kim Soo-In, Jung Yong-Taek, Yoon Jung-Hoon

机构信息

Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2014 Nov;64(Pt 11):3695-3700. doi: 10.1099/ijs.0.065334-0. Epub 2014 Aug 8.

Abstract

A Gram-stain-negative, aerobic, non-spore-forming, non-flagellated and rod-shaped bacterial strain, designated DMCK3-4(T), was isolated from the zone where the ocean and a freshwater spring meet at Jeju island, South Korea. Strain DMCK3-4(T) grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 2.0% (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain DMCK3-4(T) clustered with the strains of three members of the genus Simiduia, with which it exhibited 97.0-99.0% sequence similarity. Sequence similarities to the type strains of the other species with validly published names were less than 92.2%. Strain DMCK3-4(T) contained Q-8 as the predominant ubiquinone and summed feature 3 (C(16:1)ω7c and/or C(16:1)ω6c), C(17:1)ω8c, C(16:0), C(17:0) and C(18:1)ω7c as the major fatty acids. The major polar lipids of strain DMCK3-4(T) were phosphatidylethanolamine, phosphatidylglycerol, two unidentified glycolipids, one unidentified lipid and one unidentified aminolipid. The DNA G+C content of strain DMCK3-4(T) was 51.8 mol% and its mean DNA-DNA relatedness values with Simiduia agarivorans KCTC 23176(T), Simiduia areninigrae KCTC 23293(T) and Simiduia litorea NRIC 0917(T) were 23-34%, respectively. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain DMCK3-4(T) is distinct from other species of the genus Simiduia. On the basis of the data presented, strain DMCK3-4(T) is considered to represent a novel species of the genus Simiduia, for which the name Simiduia curdlanivorans sp. nov. is proposed. The type strain is DMCK3-4(T) ( = KCTC 42075(T) =CECT 8570(T)). An emended description of the genus Simiduia is also proposed.

摘要

从韩国济州岛海洋与淡水泉交汇处分离出一株革兰氏染色阴性、需氧、无芽孢、无鞭毛的杆状细菌,命名为DMCK3-4(T)。菌株DMCK3-4(T)在30℃、pH 7.0 - 8.0以及2.0%(w/v)NaCl存在的条件下生长最佳。基于16S rRNA基因序列构建的系统发育树表明,菌株DMCK3-4(T)与西杜氏菌属三个成员的菌株聚类在一起,与之表现出97.0 - 99.0%的序列相似性。与其他有效发表名称的物种模式菌株的序列相似性低于92.2%。菌株DMCK3-4(T)以Q-8作为主要泛醌,以总和特征3(C(16:1)ω7c和/或C(16:1)ω6c)、C(17:1)ω8c、C(16:0)、C(17:0)和C(18:1)ω7c作为主要脂肪酸。菌株DMCK3-4(T)的主要极性脂类为磷脂酰乙醇胺、磷脂酰甘油、两种未鉴定的糖脂、一种未鉴定的脂类和一种未鉴定的氨基脂类。菌株DMCK3-4(T)的DNA G+C含量为51.8 mol%,其与食琼脂西杜氏菌KCTC 23176(T)、沙栖西杜氏菌KCTC 23293(T)和滨海西杜氏菌NRIC 0917(T)的平均DNA-DNA相关性值分别为23 - 34%。这些不同的表型特征,以及系统发育和遗传独特性,表明菌株DMCK3-4(T)与西杜氏菌属的其他物种不同。根据所提供的数据,菌株DMCK3-4(T)被认为代表西杜氏菌属的一个新物种,为此提出新名称食凝胶西杜氏菌(Simiduia curdlanivorans sp. nov.)。模式菌株为DMCK3-4(T)(=KCTC 42075(T)=CECT 8570(T))。同时还提出了西杜氏菌属的修订描述。

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