Sequence error storms and the landscape of mutations in cancer.
作者信息
Kirsch Stefan, Klein Christoph A
机构信息
Fraunhofer-Institut für Toxikologie und Experimentelle Medizin, Project Group Personalized Tumor Therapy, Regensburg 93053, Germany.
出版信息
Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14289-90. doi: 10.1073/pnas.1212246109. Epub 2012 Aug 21.
Abstract
摘要
相似文献
1
Sequence error storms and the landscape of mutations in cancer.序列错误风暴与癌症中的突变格局
Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14289-90. doi: 10.1073/pnas.1212246109. Epub 2012 Aug 21.
2
Detection of ultra-rare mutations by next-generation sequencing.通过下一代测序检测超罕见突变。
Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14508-13. doi: 10.1073/pnas.1208715109. Epub 2012 Aug 1.
3
An assessment of Oxford Nanopore sequencing for human gut metagenome profiling: A pilot study of head and neck cancer patients.牛津纳米孔测序技术用于人类肠道宏基因组分析的评估：头颈部癌症患者的初步研究。
J Microbiol Methods. 2019 Nov;166:105739. doi: 10.1016/j.mimet.2019.105739. Epub 2019 Oct 15.
4
MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.环境宏基因组的MinION™纳米孔测序：一种合成方法。
Gigascience. 2017 Mar 1;6(3):1-10. doi: 10.1093/gigascience/gix007.
5
Focus on Metagenomics.关注宏基因组学。
J Biomol Tech. 2017 Apr;28(1):1. doi: 10.7171/jbt.17-2801-010. Epub 2017 Mar 29.
6
The impact of antibiotics on the gut microbiota as revealed by high throughput DNA sequencing.高通量DNA测序揭示抗生素对肠道微生物群的影响。
Discov Med. 2012 Mar;13(70):193-9.
7
One future of clinical metagenomic sequencing for infectious diseases.临床宏基因组测序在传染病领域的一个未来发展方向。
Expert Rev Mol Diagn. 2019 Oct;19(10):849-851. doi: 10.1080/14737159.2019.1658524. Epub 2019 Aug 22.
8
[Role of high-throughput sequencing in oncology].[高通量测序在肿瘤学中的作用]
Bull Cancer. 2013 Mar;100(3):295-301. doi: 10.1684/bdc.2013.1717.
9
A comprehensive investigation of metagenome assembly by linked-read sequencing.基于链接读取测序的宏基因组组装综合研究。
Microbiome. 2020 Nov 11;8(1):156. doi: 10.1186/s40168-020-00929-3.
10
Next-generation sequencing-based testing for cancer mutational landscape diversity: clinical implications?基于新一代测序的癌症突变图谱多样性检测：临床意义？
Expert Rev Mol Diagn. 2012 Sep;12(7):667-70. doi: 10.1586/erm.12.68.
引用本文的文献
1
TNER: a novel background error suppression method for mutation detection in circulating tumor DNA.TNER：一种用于循环肿瘤 DNA 突变检测的新型背景误差抑制方法。
BMC Bioinformatics. 2018 Oct 20;19(1):387. doi: 10.1186/s12859-018-2428-3.
2
Spatial Vulnerabilities of the Genome to Spontaneous Mutations Revealed with Improved Duplex Sequencing.利用改进的双链测序技术揭示基因组自发突变的空间脆弱性。
Genetics. 2018 Oct;210(2):547-558. doi: 10.1534/genetics.118.301345. Epub 2018 Aug 3.
3
Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq.使用Illumina MiSeq开发和评估一种针对线粒体基因组的优化下一代DNA测序方法。
Forensic Sci Int Genet. 2014 Nov;13:20-9. doi: 10.1016/j.fsigen.2014.05.007. Epub 2014 May 20.
4
Proposed model for the high rate of rearrangement and rapid migration observed in some IncA/C plasmid lineages.提出的模型解释了某些 IncA/C 质粒谱系中观察到的高重排率和快速迁移率。
Appl Environ Microbiol. 2013 Aug;79(16):4806-14. doi: 10.1128/AEM.01259-13. Epub 2013 Jun 7.
本文引用的文献
1
Detection of ultra-rare mutations by next-generation sequencing.通过下一代测序检测超罕见突变。
Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14508-13. doi: 10.1073/pnas.1208715109. Epub 2012 Aug 1.
2
Mutational processes molding the genomes of 21 breast cancers.21 例乳腺癌基因组的突变过程。
Cell. 2012 May 25;149(5):979-93. doi: 10.1016/j.cell.2012.04.024. Epub 2012 May 17.
3
The life history of 21 breast cancers.21 例乳腺癌的生命史。
Cell. 2012 May 25;149(5):994-1007. doi: 10.1016/j.cell.2012.04.023. Epub 2012 May 17.
4
A survey of error-correction methods for next-generation sequencing.下一代测序错误纠正方法综述。
Brief Bioinform. 2013 Jan;14(1):56-66. doi: 10.1093/bib/bbs015. Epub 2012 Apr 6.
5
Next-generation sequencing: ready for the clinics?下一代测序：准备好进入临床了吗？
Clin Genet. 2012 Jun;81(6):503-10. doi: 10.1111/j.1399-0004.2012.01865.x. Epub 2012 Apr 9.
6
Detection and quantification of rare mutations with massively parallel sequencing.大规模平行测序检测和定量稀有突变。
Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9530-5. doi: 10.1073/pnas.1105422108. Epub 2011 May 17.
7
Next-generation genomics: an integrative approach.下一代基因组学：综合方法。
Nat Rev Genet. 2010 Jul;11(7):476-86. doi: 10.1038/nrg2795.
8
Genome remodelling in a basal-like breast cancer metastasis and xenograft.基底样乳腺癌转移和异种移植中的基因组重塑。
Nature. 2010 Apr 15;464(7291):999-1005. doi: 10.1038/nature08989.
9
Genome sequencing in microfabricated high-density picolitre reactors.微制造高密度皮升反应器中的基因组测序
Nature. 2005 Sep 15;437(7057):376-80. doi: 10.1038/nature03959. Epub 2005 Jul 31.
10
Errors in DNA replication as a basis of malignant changes.DNA复制错误作为恶性变化的基础。
Cancer Res. 1974 Sep;34(9):2311-21.
Zotero 插件