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个体化医学:将“组学”应用于肺纤维化。

Personalized medicine: applying 'omics' to lung fibrosis.

机构信息

Dorothy P & Richard P Simmons Center for Interstitial Lung Disease, Pulmonary, Allergy & Critical Care Medicine, Department of Medicine, University of Pittsburgh School of Medicine, 3459 5th Avenue, Pittsburgh, PA 15261, USA.

出版信息

Biomark Med. 2012 Aug;6(4):529-40. doi: 10.2217/bmm.12.38.

DOI:10.2217/bmm.12.38
PMID:22917154
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3517740/
Abstract

Idiopathic pulmonary fibrosis (IPF), the most common fibrotic lung disease, is a chronic disease of unknown etiology with a very high mortality. Personalized medicine focuses on the use of the individual's molecular and 'omic' (i.e., genomic, epigenomic and proteomic) information to direct more efficient and cost-effective strategies for prevention, diagnosis, outcome prediction and treatment of diseases. In this review, we describe the use and promise of applying 'omic' technologies to the familial and sporadic forms of IPF as a means to personalize diagnosis and outcome prediction in IPF. The validation and implementation of such approaches will be crucial to personalize IPF patient care, prioritize lung transplant and stratify patients for drug studies, as well as, in the future, predict response to therapies as they emerge.

摘要

特发性肺纤维化(IPF)是最常见的肺纤维化疾病,是一种病因不明的慢性疾病,死亡率非常高。个性化医学专注于利用个体的分子和“组学”(即基因组、表观基因组和蛋白质组学)信息,为疾病的预防、诊断、预后预测和治疗提供更有效和更具成本效益的策略。在这篇综述中,我们描述了将“组学”技术应用于家族性和散发性 IPF 的用途和前景,作为一种个性化诊断和预后预测 IPF 的方法。此类方法的验证和实施对于实现 IPF 患者护理的个性化、优先进行肺移植以及对药物研究进行分层,以及在未来预测治疗反应的出现,都将至关重要。

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Personalized medicine: applying 'omics' to lung fibrosis.个体化医学:将“组学”应用于肺纤维化。
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2
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引用本文的文献

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EBioMedicine. 2023 Sep;95:104766. doi: 10.1016/j.ebiom.2023.104766. Epub 2023 Aug 23.
2
Epigenetics Approaches toward Precision Medicine for Idiopathic Pulmonary Fibrosis: Focus on DNA Methylation.针对特发性肺纤维化精准医学的表观遗传学方法:聚焦于DNA甲基化
Biomedicines. 2023 Mar 28;11(4):1047. doi: 10.3390/biomedicines11041047.
3
Mouse Models of Lung Fibrosis.肺纤维化的小鼠模型。

本文引用的文献

1
Global methylation patterns in idiopathic pulmonary fibrosis.特发性肺纤维化中的全球甲基化模式。
PLoS One. 2012;7(4):e33770. doi: 10.1371/journal.pone.0033770. Epub 2012 Apr 10.
2
Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish.核糖体图谱分析表明,miR-430 在导致 zebrafish 中 mRNA 降解之前降低了翻译。
Science. 2012 Apr 13;336(6078):233-7. doi: 10.1126/science.1215704. Epub 2012 Mar 15.
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Evolving genomic approaches to idiopathic pulmonary fibrosis: moving beyond genes.不断发展的特发性肺纤维化基因组研究方法:超越基因。
Methods Mol Biol. 2021;2299:291-321. doi: 10.1007/978-1-0716-1382-5_21.
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Proteome Investigation of Rat Lungs subjected to Ex Vivo Perfusion (EVLP).离体肺灌注(EVLP)后大鼠肺的蛋白质组学研究。
Molecules. 2018 Nov 22;23(12):3061. doi: 10.3390/molecules23123061.
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Systems medicine advances in interstitial lung disease.系统医学在间质性肺疾病中的进展。
Eur Respir Rev. 2017 Sep 27;26(145). doi: 10.1183/16000617.0021-2017. Print 2017 Sep 30.
6
Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic Pulmonary Fibrosis.通过对特发性肺纤维化患者福尔马林固定、石蜡包埋(FFPE)肺组织进行RNA测序来鉴定和验证差异表达的转录本。
BMC Pulm Med. 2017 Jan 12;17(1):15. doi: 10.1186/s12890-016-0356-4.
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Genome sequencing of idiopathic pulmonary fibrosis in conjunction with a medical school human anatomy course.特发性肺纤维化的基因组测序与医学院人体解剖学课程相结合。
PLoS One. 2014 Sep 5;9(9):e106744. doi: 10.1371/journal.pone.0106744. eCollection 2014.
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Molecular biomarkers in interstitial lung diseases.间质性肺疾病中的分子生物标志物
Mol Diagn Ther. 2014 Oct;18(5):505-22. doi: 10.1007/s40291-014-0109-0.
9
The mitochondrial cardiolipin remodeling enzyme lysocardiolipin acyltransferase is a novel target in pulmonary fibrosis.线粒体心磷脂重塑酶溶血心磷脂酰基转移酶是肺纤维化的一个新靶点。
Am J Respir Crit Care Med. 2014 Jun 1;189(11):1402-15. doi: 10.1164/rccm.201310-1917OC.
10
Peripheral blood mononuclear cell gene expression profiles predict poor outcome in idiopathic pulmonary fibrosis.特发性肺纤维化患者外周血单个核细胞基因表达谱预测不良预后。
Sci Transl Med. 2013 Oct 2;5(205):205ra136. doi: 10.1126/scitranslmed.3005964.
Clin Transl Sci. 2011 Oct;4(5):372-9. doi: 10.1111/j.1752-8062.2011.00287.x.
4
Peripheral blood proteins predict mortality in idiopathic pulmonary fibrosis.外周血蛋白预测特发性肺纤维化患者的死亡率。
Am J Respir Crit Care Med. 2012 Jan 1;185(1):67-76. doi: 10.1164/rccm.201101-0058OC.
5
Forced vital capacity in patients with idiopathic pulmonary fibrosis: test properties and minimal clinically important difference.特发性肺纤维化患者的用力肺活量:测试特性和最小临床重要差异。
Am J Respir Crit Care Med. 2011 Dec 15;184(12):1382-9. doi: 10.1164/rccm.201105-0840OC. Epub 2011 Sep 22.
6
A promoter SNP rs4073T>A in the common allele of the interleukin 8 gene is associated with the development of idiopathic pulmonary fibrosis via the IL-8 protein enhancing mode.白细胞介素 8 基因常见等位基因中的启动子 SNP rs4073T>A 通过增强 IL-8 蛋白的方式与特发性肺纤维化的发生有关。
Respir Res. 2011 Jun 8;12(1):73. doi: 10.1186/1465-9921-12-73.
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Absence of Thy-1 results in TGF-β induced MMP-9 expression and confers a profibrotic phenotype to human lung fibroblasts.缺乏 Thy-1 会导致 TGF-β 诱导的 MMP-9 表达,并赋予人肺成纤维细胞致纤维化表型。
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A variant in the promoter of MUC5B and idiopathic pulmonary fibrosis.MUC5B启动子变异与特发性肺纤维化
N Engl J Med. 2011 Apr 21;364(16):1576-7. doi: 10.1056/NEJMc1013504.
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A common MUC5B promoter polymorphism and pulmonary fibrosis.一种常见的MUC5B启动子多态性与肺纤维化。
N Engl J Med. 2011 Apr 21;364(16):1503-12. doi: 10.1056/NEJMoa1013660.
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An official ATS/ERS/JRS/ALAT statement: idiopathic pulmonary fibrosis: evidence-based guidelines for diagnosis and management.特发性肺纤维化:诊断和管理的循证指南(美国胸科学会/欧洲呼吸学会/日本呼吸学会/拉丁美洲胸科学会联合发布)
Am J Respir Crit Care Med. 2011 Mar 15;183(6):788-824. doi: 10.1164/rccm.2009-040GL.