Center for Molecular Modeling, DCB∕CIT, National Institutes of Health, U.S. DHHS, Bethesda, Maryland 20892, USA.
J Chem Phys. 2012 Aug 21;137(7):074102. doi: 10.1063/1.4742910.
A self-consistent method is presented for the calculation of the local dielectric permittivity and electrostatic potential generated by a solute of arbitrary shape and charge distribution in a polar and polarizable liquid. The structure and dynamics behavior of the liquid at the solute/liquid interface determine the spatial variations of the density and the dielectric response. Emphasis here is on the treatment of the interface. The method is an extension of conventional methods used in continuum protein electrostatics, and can be used to estimate changes in the static dielectric response of the liquid as it adapts to charge redistribution within the solute. This is most relevant in the context of polarizable force fields, during electron structure optimization in quantum chemical calculations, or upon charge transfer. The method is computationally efficient and well suited for code parallelization, and can be used for on-the-fly calculations of the local permittivity in dynamics simulations of systems with large and heterogeneous charge distributions, such as proteins, nucleic acids, and polyelectrolytes. Numerical calculation of the system free energy is discussed for the general case of a liquid with field-dependent dielectric response.
本文提出了一种自洽方法,用于计算任意形状和电荷分布的溶质在极性和极化液体中产生的局部介电常数和静电势。液体在溶质/液体界面处的结构和动力学行为决定了密度和介电响应的空间变化。本文的重点是界面的处理。该方法是连续蛋白质静电学中常用方法的扩展,可用于估计液体在溶质内电荷重新分布时其静态介电响应的变化。这在极化力场的背景下最为相关,在量子化学计算中的电子结构优化期间或在电荷转移期间。该方法计算效率高,非常适合代码并行化,可用于具有大的和异质电荷分布的系统(如蛋白质、核酸和聚电解质)的动力学模拟中的局部介电常数的即时计算。本文还讨论了一般情况下具有场相关介电响应的液体的系统自由能的数值计算。