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被子植物油体蛋白在种间的大小扩张和分子进化。

Species-specific size expansion and molecular evolution of the oleosins in angiosperms.

机构信息

Ministry of Education Engineering Research Center of Bioreactor and Pharmaceutical Development, Jilin Agricultural University, Changchun, Jilin 130118, China.

出版信息

Gene. 2012 Nov 10;509(2):247-57. doi: 10.1016/j.gene.2012.08.014. Epub 2012 Aug 24.

Abstract

Oleosins are hydrophobic plant proteins thought to be important for the formation of oil bodies, which supply energy for seed germination and subsequent seedling growth. To better understand the evolutionary history and diversity of the oleosin gene family in plants, especially angiosperms, we systematically investigated the molecular evolution of this family using eight representative angiosperm species. A total of 73 oleosin members were identified, with six members in each of four monocot species and a greater but variable number in the four eudicots. A phylogenetic analysis revealed that the angiosperm oleosin genes belonged to three monophyletic lineages. Species-specific gene duplications, caused mainly by segmental duplication, led to the great expansion of oleosin genes and occurred frequently in eudicots after the monocot-eudicot divergence. Functional divergence analyses indicate that significant amino acid site-specific selective constraints acted on the different clades of oleosins. Adaptive evolution analyses demonstrate that oleosin genes were subject to strong purifying selection after their species-specific duplications and that rapid evolution occurred with a high degree of evolutionary dynamics in the pollen-specific oleosin genes. In conclusion, this study serves as a foundation for genome-wide analyses of the oleosins. These findings provide insight into the function and evolution of this gene family in angiosperms and pave the way for studies in other plants.

摘要

油体蛋白是一种疏水性植物蛋白,被认为对油体的形成很重要,油体为种子萌发和随后的幼苗生长提供能量。为了更好地了解植物,特别是被子植物中油体蛋白基因家族的进化历史和多样性,我们系统地研究了该家族在 8 个代表性被子植物物种中的分子进化。共鉴定出 73 个油体蛋白成员,其中 4 个单子叶植物物种各有 6 个成员,而 4 个双子叶植物物种的数量则更多但变化较大。系统发育分析表明,被子植物的油体蛋白基因属于三个单系分支。物种特异性基因复制主要由片段复制引起,导致油体蛋白基因的大量扩张,并且在单子叶植物和双子叶植物分化后在双子叶植物中频繁发生。功能分化分析表明,不同的油体蛋白分支受到显著的氨基酸位点特异性选择约束。适应性进化分析表明,油体蛋白基因在物种特异性复制后受到强烈的纯化选择,并且花粉特异性油体蛋白基因具有高度的进化动态,发生了快速进化。总之,本研究为油体蛋白的全基因组分析奠定了基础。这些发现为被子植物中该基因家族的功能和进化提供了深入的了解,并为其他植物的研究铺平了道路。

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