基于全长转录组鉴定草本牡丹(Paeonia lactifolra Pall.)种子中三酰甘油生物合成和储存的关键基因。
Identification of key genes for triacylglycerol biosynthesis and storage in herbaceous peony (Paeonia lactifolra Pall.) seeds based on full-length transcriptome.
机构信息
College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, 225009, China.
Joint International Research Laboratory of Agriculture and Agri-Product Safety, the Ministry of Education of China, Yangzhou University, Yangzhou, 225009, China.
出版信息
BMC Genomics. 2024 Jun 15;25(1):601. doi: 10.1186/s12864-024-10513-w.
BACKGROUND
The herbaceous peony (Paeonia lactiflora Pall.) is extensively cultivated in China due to its root being used as a traditional Chinese medicine known as 'Radix Paeoniae Alba'. In recent years, it has been discovered that its seeds incorporate abundant unsaturated fatty acids, thereby presenting a potential new oilseed plant. Surprisingly, little is known about the full-length transcriptome sequencing of Paeonia lactiflora, limiting research into its gene function and molecular mechanisms.
RESULTS
A total of 484,931 Reads of Inserts (ROI) sequences and 1,455,771 full-Length non-chimeric reads (FLNC) sequences were obtained for CDS prediction, TF analysis, SSR analysis and lncRNA identification. In addition, gene function annotation and gene structure analysis were performed. A total of 4905 transcripts were related to lipid metabolism biosynthesis pathway, belonging to 28 enzymes. We use these data to identify 10 oleosin (OLE) and 5 diacylglycerol acyltransferase (DGAT) gene members after de-redundancy. The analysis of physicochemical properties and secondary structure showed them similarity in gene family respectively. The phylogenetic analysis showed that the distribution of OLE and DGAT family members was roughly the same as that of Arabidopsis. Quantitative real-time polymerase chain reaction (qRT-PCR) analyses revealed expression changes in different seed development stages, and showed a trend of increasing and then decreasing.
CONCLUSION
In summary, these results provide new insights into the molecular mechanism of triacylglycerol (TAG) biosynthesis and storage during the seedling stage in Paeonia lactiflora. It provides theoretical references for selecting and breeding oil varieties and understanding the functions of oil storage as well as lipid synthesis related genes in Paeonia lactiflora.
背景
由于芍药(Paeonia lactiflora Pall.)的根被用作中药白芍,因此在中国广泛种植。近年来,人们发现其种子中含有丰富的不饱和脂肪酸,因此具有成为潜在新油籽植物的潜力。令人惊讶的是,对于芍药全长转录组测序的研究知之甚少,限制了对其基因功能和分子机制的研究。
结果
共获得 484931 个插入片段(ROI)序列和 1455771 个全长非嵌合(FLNC)序列,用于 CDS 预测、TF 分析、SSR 分析和 lncRNA 鉴定。此外,还进行了基因功能注释和基因结构分析。共有 4905 个转录本与脂质代谢生物合成途径相关,属于 28 种酶。我们使用这些数据鉴定了 10 个油体蛋白(OLE)和 5 个二酰基甘油酰基转移酶(DGAT)基因成员,经过去冗余处理。理化性质和二级结构分析表明,它们在基因家族中具有相似性。系统发育分析表明,OLE 和 DGAT 家族成员的分布与拟南芥大致相同。定量实时聚合酶链反应(qRT-PCR)分析显示,在不同的种子发育阶段表达发生变化,表现出先增加后减少的趋势。
结论
总之,这些结果为芍药种子发育阶段三酰甘油(TAG)生物合成和储存的分子机制提供了新的见解。为选择和培育油品种以及了解芍药中与油脂储存和脂质合成相关基因的功能提供了理论参考。