• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

单体和 μ-氧代二聚铁原卟啉 IX 的紫外-可见光谱的实验和时变密度泛函理论特征化。

Experimental and time-dependent density functional theory characterization of the UV-visible spectra of monomeric and μ-oxo dimeric ferriprotoporphyrin IX.

机构信息

Department of Chemistry, Department of Chemistry, University of Cape Town, Private Bag, Rondebosch 7701 South Africa.

出版信息

Inorg Chem. 2012 Oct 1;51(19):10233-50. doi: 10.1021/ic301154e. Epub 2012 Sep 10.

DOI:10.1021/ic301154e
PMID:22963249
Abstract

Speciation of ferriprotoporphyrin IX, Fe(III)PPIX, in aqueous solution is complex. Despite the use of its characteristic spectroscopic features for identification, the theoretical basis of the unique UV-visible absorbance spectrum of μ-Fe(III)PPIXO has not been explored. To investigate this and to establish a structural and spectroscopic model for Fe(III)PPIX species, density functional theory (DFT) calculations were undertaken for H(2)O-Fe(III)PPIX and μ-Fe(III)PPIXO. The models agreed with related Fe(III)porphyrin crystal structures and reproduced vibrational spectra well. The UV-visible absorbance spectra of H(2)O-Fe(III)PPIX and μ-Fe(III)PPIXO were calculated using time-dependent DFT and reproduced major features of the experimental spectra of both. Transitions contributing to calculated excitations have been identified. The features of the electronic spectrum calculated for μ-Fe(III)PPIXO were attributed to delocalization of electron density between the two porphyrin rings of the dimer, the weaker ligand field of the axial ligand, and antiferromagnetic coupling of the Fe(III) centers. Room temperature magnetic circular dichroism (MCD) spectra have been recorded and are shown to be useful in distinguishing between these two Fe(III)PPIX species. Bands underlying major spectroscopic features were identified through simultaneous deconvolution of UV-visible and MCD spectra. Computed UV-visible spectra were compared to deconvoluted spectra. Interpretation of the prominent bands of H(2)O-Fe(III)PPIX largely conforms to previous literature. Owing to the weak paramagnetism of μ-Fe(III)PPIXO at room temperature and the larger number of underlying excitations, interpretation of its experimental UV-visible spectrum was necessarily tentative. Nonetheless, comparison with the calculated spectra of antiferromagnetically coupled and paramagnetic forms of the μ-oxo dimer of Fe(III)porphine suggested that the composition of the Soret band involves a mixture of π→π* and π→d(π) charge transfer transitions. The Q-band and charge transfer bands appear to amalgamate into a mixed low energy envelope consisting of excitations with heavily admixed π→π* and charge transfer transitions.

摘要

在水溶液中,原卟啉 IX 铁(III),Fe(III)PPIX 的形态复杂。尽管其特征光谱特征用于鉴定,但 μ-[Fe(III)PPIX](2)O 的独特紫外可见吸收光谱的理论基础尚未得到探索。为了研究这一点,并为 Fe(III)PPIX 物种建立结构和光谱模型,进行了密度泛函理论(DFT)计算,用于 H(2)O-Fe(III)PPIX 和 μ-[Fe(III)PPIX](2)O。这些模型与相关的 Fe(III)卟啉晶体结构一致,并很好地再现了振动光谱。使用时间相关的 DFT 计算了 H(2)O-Fe(III)PPIX 和 μ-[Fe(III)PPIX](2)O 的紫外可见吸收光谱,并再现了这两种实验光谱的主要特征。已经确定了对计算激发有贡献的跃迁。计算得出的 μ-[Fe(III)PPIX](2)O 的电子光谱特征归因于二聚体两个卟啉环之间的电子密度离域、轴向配体较弱的配位场以及 Fe(III)中心的反铁磁耦合。记录了室温磁圆二色性(MCD)光谱,并证明其可用于区分这两种 Fe(III)PPIX 物种。通过同时对紫外可见和 MCD 光谱进行反卷积,确定了主要光谱特征下的带。将计算出的紫外可见光谱与反卷积光谱进行了比较。对 H(2)O-Fe(III)PPIX 主要谱带的解释在很大程度上与先前的文献一致。由于 μ-[Fe(III)PPIX](2)O 在室温下的弱顺磁性和更多的基态激发,其实验紫外可见光谱的解释必然是试探性的。尽管如此,与反铁磁耦合和 μ-氧合 Fe(III)卟啉二聚体的顺磁性形式的计算光谱进行比较表明,Soret 带的组成涉及π→π和π→d(π)电荷转移跃迁的混合物。Q 带和电荷转移带似乎合并为一个混合的低能包络,其中包含了大量混合的π→π和电荷转移跃迁的激发。

相似文献

1
Experimental and time-dependent density functional theory characterization of the UV-visible spectra of monomeric and μ-oxo dimeric ferriprotoporphyrin IX.单体和 μ-氧代二聚铁原卟啉 IX 的紫外-可见光谱的实验和时变密度泛函理论特征化。
Inorg Chem. 2012 Oct 1;51(19):10233-50. doi: 10.1021/ic301154e. Epub 2012 Sep 10.
2
Speciation and structure of ferriprotoporphyrin IX in aqueous solution: spectroscopic and diffusion measurements demonstrate dimerization, but not mu-oxo dimer formation.水溶液中高铁原卟啉IX的形态与结构:光谱和扩散测量表明其发生二聚,但未形成μ-氧代二聚体。
J Biol Inorg Chem. 2007 Jan;12(1):101-17. doi: 10.1007/s00775-006-0170-1. Epub 2006 Sep 14.
3
Multiple spectroscopic and magnetic techniques show that chloroquine induces formation of the μ-oxo dimer of ferriprotoporphyrin IX.多种光谱和磁学技术表明,氯喹诱导原卟啉 IX 的 μ-氧合二聚体的形成。
J Inorg Biochem. 2014 Apr;133:40-9. doi: 10.1016/j.jinorgbio.2014.01.002. Epub 2014 Jan 16.
4
Speciation of ferriprotoporphyrin IX in aqueous and mixed aqueous solution is controlled by solvent identity, pH, and salt concentration.在水相和混合水溶液中,高铁原卟啉IX的形态受溶剂特性、pH值和盐浓度的控制。
Inorg Chem. 2009 Aug 17;48(16):7994-8003. doi: 10.1021/ic900647y.
5
Aggregated enhanced Raman scattering in Fe(III)PPIX solutions: the effects of concentration and chloroquine on excitonic interactions.Fe(III)原卟啉IX溶液中的聚集增强拉曼散射:浓度和氯喹对激子相互作用的影响
J Phys Chem B. 2009 May 14;113(19):6910-6. doi: 10.1021/jp811028a.
6
Interactions of quinoline antimalarials with hematin in solution.喹啉类抗疟药与溶液中高铁血红素的相互作用。
J Inorg Biochem. 2006 May;100(5-6):916-26. doi: 10.1016/j.jinorgbio.2005.11.005. Epub 2005 Dec 27.
7
Influence of molecular geometry, exchange-correlation functional, and solvent effects in the modeling of vertical excitation energies in phthalocyanines using time-dependent density functional theory (TDDFT) and polarized continuum model TDDFT methods: can modern computational chemistry methods explain experimental controversies?使用含时密度泛函理论(TDDFT)和极化连续介质模型TDDFT方法对酞菁中垂直激发能进行建模时分子几何结构、交换相关泛函和溶剂效应的影响:现代计算化学方法能否解释实验争议?
J Phys Chem A. 2007 Dec 20;111(50):12901-13. doi: 10.1021/jp0759731. Epub 2007 Nov 16.
8
Detailed assignment of the magnetic circular dichroism and UV-vis spectra of five-coordinate high-spin ferric [Fe(TPP)(Cl)].五配位高自旋铁(III)[Fe(TPP)(Cl)]的磁圆二色性和紫外可见光谱的详细归属
Inorg Chem. 2008 Jun 2;47(11):4963-76. doi: 10.1021/ic8002838. Epub 2008 Apr 25.
9
Spectroscopic study of [Fe2O2(5-Et3-TPA)2]3+: nature of the Fe2O2 diamond core and its possible relevance to high-valent binuclear non-heme enzyme intermediates.[Fe2O2(5-Et3-TPA)2]3+的光谱研究:Fe2O2菱形核的性质及其与高价双核非血红素酶中间体的可能关联
J Am Chem Soc. 2003 Jun 18;125(24):7344-56. doi: 10.1021/ja021137n.
10
Spectroscopic properties and electronic structure of five- and six-coordinate iron(II) porphyrin NO complexes: Effect of the axial N-donor ligand.五配位和六配位铁(II)卟啉一氧化氮配合物的光谱性质和电子结构:轴向氮供体配体的影响。
Inorg Chem. 2006 Apr 3;45(7):2795-811. doi: 10.1021/ic050865j.

引用本文的文献

1
Hemin-catalyzed oxidative oligomerization of -aminodiphenylamine (PADPA) in the presence of aqueous sodium dodecylbenzenesulfonate (SDBS) micelles.在十二烷基苯磺酸钠(SDBS)胶束水溶液存在下,血红素催化对氨基二苯胺(PADPA)的氧化低聚反应。
RSC Adv. 2022 May 3;12(21):13154-13167. doi: 10.1039/d2ra02198f. eCollection 2022 Apr 28.
2
A first principle study of heme molecule as an active adsorbent for halogenated hydrocarbons.第一性原理研究血红素分子作为卤代烃的活性吸附剂。
J Mol Model. 2021 Jun 25;27(7):209. doi: 10.1007/s00894-021-04821-1.
3
Unravelling the mechanisms controlling heme supply and demand.
揭示控制血红素供应和需求的机制。
Proc Natl Acad Sci U S A. 2021 Jun 1;118(22). doi: 10.1073/pnas.2104008118.
4
Heme Detoxification in the Malaria Parasite: A Target for Antimalarial Drug Development.疟原虫血红素解毒:抗疟药物研发的新靶点
Acc Chem Res. 2021 Jun 1;54(11):2649-2659. doi: 10.1021/acs.accounts.1c00154. Epub 2021 May 13.
5
A mechanism for CO regulation of ion channels.一种CO调节离子通道的机制。
Nat Commun. 2018 Mar 2;9(1):907. doi: 10.1038/s41467-018-03291-z.
6
Characterization of the second conserved domain in the heme uptake protein HtaA from Corynebacterium diphtheriae.白喉棒状杆菌血红素摄取蛋白HtaA中第二个保守结构域的特征分析
J Inorg Biochem. 2017 Feb;167:124-133. doi: 10.1016/j.jinorgbio.2016.11.027. Epub 2016 Nov 23.