土曲霉属菌株 1534 全基因组草图
Draft genome sequence of Tsukamurella sp. strain 1534.
机构信息
Aix Marseille Université, URMITE, UM63 CNRS 7278, IRD 198, INSERM 1095, Faculté de Médecine, Marseille, France.
出版信息
J Bacteriol. 2012 Oct;194(19):5482-3. doi: 10.1128/JB.01279-12.
Abstract
A draft genome sequence of Tsukamurella sp., an aerobic bacterium isolated from a human sputum specimen, is described here. A new virus or provirus, TPA4, was characterized.
摘要
这里描述了一株从人类痰标本中分离得到的需氧细菌——管囊酵母属（Tsukamurella sp.）的基因组草图序列。还对一种新的病毒或前病毒 TPA4 进行了特征描述。
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本文引用的文献
1
CharProtDB: a database of experimentally characterized protein annotations.CharProtDB：一个经过实验验证的蛋白质注释数据库。
Nucleic Acids Res. 2012 Jan;40(Database issue):D237-41. doi: 10.1093/nar/gkr1133. Epub 2011 Dec 2.
2
Complete genome sequence of Tsukamurella paurometabola type strain (no. 33).迟缓库特氏菌模式菌株（编号33）的全基因组序列
Stand Genomic Sci. 2011 Jul 1;4(3):342-51. doi: 10.4056/sigs.1894556. Epub 2011 Jun 30.
3
PHAST: a fast phage search tool.PHAST：一种快速噬菌体搜索工具。
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W347-52. doi: 10.1093/nar/gkr485. Epub 2011 Jun 14.
4
UniProt Knowledgebase: a hub of integrated protein data.UniProt 知识库：一个集成蛋白质数据的中心。
Database (Oxford). 2011 Mar 29;2011:bar009. doi: 10.1093/database/bar009. Print 2011.
5
Genome sequence and characterization of the Tsukamurella bacteriophage TPA2.基因组序列和特性分析Tsukamurella 噬菌体 TPA2。
Appl Environ Microbiol. 2011 Feb;77(4):1389-98. doi: 10.1128/AEM.01938-10. Epub 2010 Dec 23.
6
Genomic characterization of mycobacteriophage Giles: evidence for phage acquisition of host DNA by illegitimate recombination.分枝杆菌噬菌体贾尔斯的基因组特征：噬菌体通过异常重组获取宿主DNA的证据。
J Bacteriol. 2008 Mar;190(6):2172-82. doi: 10.1128/JB.01657-07. Epub 2008 Jan 4.
7
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
8
Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences.噬菌体前体查找器：一种用于原核生物基因组序列的噬菌体前体基因座预测工具。
In Silico Biol. 2006;6(3):223-7.
9
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.ARAGORN，一个用于在核苷酸序列中检测tRNA基因和tmRNA基因的程序。
Nucleic Acids Res. 2004 Jan 2;32(1):11-6. doi: 10.1093/nar/gkh152. Print 2004.
10
Bacteriophages: evolution of the majority.噬菌体：多数的进化
Theor Popul Biol. 2002 Jun;61(4):471-80. doi: 10.1006/tpbi.2002.1590.
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