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半乳糖吡喃糖苷和葡萄糖吡喃糖苷中的氢键:密度泛函理论研究。

Hydrogen bonds in galactopyranoside and glucopyranoside: a density functional theory study.

机构信息

Chemistry Department, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia.

出版信息

J Mol Model. 2013 Feb;19(2):589-99. doi: 10.1007/s00894-012-1576-z. Epub 2012 Sep 13.

Abstract

Density functional theory calculations on two glycosides, namely, n-octyl-β-D-glucopyranoside (C(8)O-β-Glc) and n-octyl-β-D-galactopyranoside (C(8)O-β-Gal) were performed for geometry optimization at the B3LYP/6-31G level. Both molecules are stereoisomers (epimers) differing only in the orientation of the hydroxyl group at the C4 position. Thus it is interesting to investigate electronically the effect of the direction (axial/equatorial) of the hydroxyl group at the C4 position. The structure parameters of X-H∙∙∙Y intramolecular hydrogen bonds were analyzed, while the nature of these bonds and the intramolecular interactions were considered using the atoms in molecules (AIM) approach. Natural bond orbital analysis (NBO) was used to determine bond orders, charge and lone pair electrons on each atom and effective non-bonding interactions. We have also reported electronic energy and dipole moment in gas and solution phases. Further, the electronic properties such as the highest occupied molecular orbital, lowest unoccupied molecular orbital, ionization energy, electron affinity, electronic chemical potential, chemical hardness, softness and electrophilicity index, are also presented here for both C(8)O-β-Glc and C(8)O-β-Gal. These results show that, while C(8)O-β-Glc possess- only one hydrogen bond, C(8)O-β-Gal has two intramolecular hydrogen bonds, which further confirms the anomalous stability of the latter in self-assembly phenomena.

摘要

采用 B3LYP/6-31G 方法对两种糖苷,即正辛基-β-D-吡喃葡萄糖苷(C(8)O-β-Glc)和正辛基-β-D-吡喃半乳糖苷(C(8)O-β-Gal)进行了几何优化的密度泛函理论计算。这两种分子都是立体异构体(差向异构体),仅在 C4 位羟基的取向不同。因此,研究 C4 位羟基的方向(轴向/平伏向)对电子的影响是很有趣的。分析了 X-H∙∙∙Y 分子内氢键的结构参数,同时使用分子中的原子(AIM)方法考虑了这些键的性质和分子内相互作用。自然键轨道分析(NBO)用于确定每个原子的键序、电荷和孤对电子,以及有效非键相互作用。我们还报告了气相和溶液相中的电子能和偶极矩。此外,还呈现了 C(8)O-β-Glc 和 C(8)O-β-Gal 的最高占据分子轨道、最低未占据分子轨道、电离能、电子亲和能、电子化学势、化学硬度、软度和电亲性指数等电子性质。这些结果表明,虽然 C(8)O-β-Glc 只具有一个氢键,但 C(8)O-β-Gal 具有两个分子内氢键,这进一步证实了后者在自组装现象中的异常稳定性。

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