Equipe de Chimie et Biochimie Théoriques, UMR 7565 CNRS UL, Université de Lorraine, BP 70239, 54506, Vandoeuvre-lès-Nancy, France.
J Mol Model. 2013 Feb;19(2):581-8. doi: 10.1007/s00894-012-1580-3. Epub 2012 Sep 13.
The interaction between one polychlorobiphenyl (3,3',4,4',-tetrachlorobiphenyl, coded PCB77) and the four DNA nucleic acid-base is studied by means of quantum mechanics calculations in stacked conformations. It is shown that even if the intermolecular dispersion energy is the largest component of the total interaction energy, some other contributions play a non negligible role. In particular the electrostatic dipole-dipole interaction and the charge transfer from the nucleobase to the PCB are responsible for the relative orientation of the monomers in the complexes. In addition, the charge transfer tends to flatten the PCB, which could therefore intercalate more easily between DNA base pairs. From these seminal results, we predict that PCB could intercalate completely between two base pairs, preferably between Guanine:Cytosine pairs.
采用堆积构象的量子力学计算方法研究了一种多氯联苯(3,3',4,4',-四氯联苯,编码为 PCB77)与四种 DNA 核酸碱基之间的相互作用。结果表明,即使分子间色散能是总相互作用能的最大组成部分,其他一些贡献也起着不可忽视的作用。特别是静电偶极-偶极相互作用和从碱基到 PCB 的电荷转移负责复合物中单体的相对取向。此外,电荷转移趋于使 PCB 变平,从而更容易在 DNA 碱基对之间嵌入。从这些初步结果中,我们预测 PCB 可以完全嵌入在两个碱基对之间,最好是嵌入在鸟嘌呤:胞嘧啶对之间。