Department of Physics, Arizona State University, Tempe, AZ 85287, USA.
Rep Prog Phys. 2012 Oct;75(10):102601. doi: 10.1088/0034-4885/75/10/102601. Epub 2012 Sep 13.
Research opportunities and techniques are reviewed for the application of hard x-ray pulsed free-electron lasers (XFEL) to structural biology. These include the imaging of protein nanocrystals, single particles such as viruses, pump--probe experiments for time-resolved nanocrystallography, and snapshot wide-angle x-ray scattering (WAXS) from molecules in solution. The use of femtosecond exposure times, rather than freezing of samples, as a means of minimizing radiation damage is shown to open up new opportunities for the molecular imaging of biochemical reactions at room temperature in solution. This is possible using a 'diffract-and-destroy' mode in which the incident pulse terminates before radiation damage begins. Methods for delivering hundreds of hydrated bioparticles per second (in random orientations) to a pulsed x-ray beam are described. New data analysis approaches are outlined for the correlated fluctuations in fast WAXS, for protein nanocrystals just a few molecules on a side, and for the continuous x-ray scattering from a single virus. Methods for determining the orientation of a molecule from its diffraction pattern are reviewed. Methods for the preparation of protein nanocrystals are also reviewed. New opportunities for solving the phase problem for XFEL data are outlined. A summary of the latest results is given, which now extend to atomic resolution for nanocrystals. Possibilities for time-resolved chemistry using fast WAXS (solution scattering) from mixtures is reviewed, toward the general goal of making molecular movies of biochemical processes.
研究机会和技术被审查,用于将硬 X 射线脉冲自由电子激光(XFEL)应用于结构生物学。这些包括蛋白质纳米晶体的成像、病毒等单颗粒、用于时间分辨纳米晶体学的泵浦-探测实验,以及溶液中分子的快照广角 X 射线散射(WAXS)。使用飞秒曝光时间,而不是样品冻结,作为最小化辐射损伤的一种手段,被证明为在溶液中室温下进行生物化学反应的分子成像开辟了新的机会。这是通过“衍射和破坏”模式实现的,其中入射脉冲在辐射损伤开始之前终止。描述了每秒向脉冲 X 射线束输送数百个水合生物颗粒(以随机方向)的方法。概述了用于快速 WAXS 的相关波动、边长只有几个分子的蛋白质纳米晶体以及单个病毒的连续 X 射线散射的新数据分析方法。还回顾了从衍射图确定分子取向的方法。还回顾了蛋白质纳米晶体的制备方法。概述了用于解决 XFEL 数据相位问题的新方法。给出了最新结果的摘要,现在已经扩展到纳米晶体的原子分辨率。还回顾了使用快速 WAXS(溶液散射)进行时间分辨化学的可能性,以实现生物化学过程的分子电影制作的总体目标。