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基于细胞能量状态的动力学代谢模型:丁酸钠刺激下 CHO 细胞行为的研究。

A kinetic-metabolic model based on cell energetic state: study of CHO cell behavior under Na-butyrate stimulation.

机构信息

Canada Research Chair in Applied Metabolic Engineering, Department of Chemical Engineering, École Polytechnique de Montréal, Centre-ville Station, Canada.

出版信息

Bioprocess Biosyst Eng. 2013 Apr;36(4):469-87. doi: 10.1007/s00449-012-0804-3. Epub 2012 Sep 14.

Abstract

A kinetic-metabolic model approach describing and simulating Chinese hamster ovary (CHO) cell behavior is presented. The model includes glycolysis, pentose phosphate pathway, TCA cycle, respiratory chain, redox state and energetic metabolism. Growth kinetic is defined as a function of the major precursors for the synthesis of cell building blocks. Michaelis-Menten type kinetic is used for metabolic intermediates as well as for regulatory functions from energy shuttles (ATP/ADP) and cofactors (NAD/H and NADP/H). Model structure and parameters were first calibrated using results from bioreactor cultures of CHO cells expressing recombinant t-PA. It is shown that the model can simulate experimental data for all available experimental data, such as extracellular glucose, glutamine, lactate and ammonium concentration time profiles, as well as cell energetic state. A sensitivity analysis allowed identifying the most sensitive parameters. The model was then shown to be readily adaptable for studying the effect of sodium butyrate on CHO cells metabolism, where it was applied to the cases with sodium butyrate addition either at mid-exponential growth phase (48 h) or at the early plateau phase (74 h). In both cases, a global optimization routine was used for the simultaneous estimation of the most sensitive parameters, while the insensitive parameters were considered as constants. Finally, confidence intervals for the estimated parameters were calculated. Results presented here further substantiate our previous findings that butyrate treatment at mid-exponential phase may cause a shift in cellular metabolism toward a sustained and increased efficiency of glucose utilization channeled through the TCA cycle.

摘要

本文提出了一种描述和模拟中国仓鼠卵巢(CHO)细胞行为的代谢动力学模型方法。该模型包括糖酵解、戊糖磷酸途径、三羧酸循环、呼吸链、氧化还原状态和能量代谢。生长动力学定义为细胞构建块合成的主要前体的函数。米氏动力学用于代谢中间产物以及能量穿梭(ATP/ADP)和辅酶(NAD/H 和 NADP/H)的调节功能。首先使用表达重组 t-PA 的 CHO 细胞生物反应器培养的结果对模型结构和参数进行了校准。结果表明,该模型可以模拟所有可用实验数据的实验数据,例如细胞外葡萄糖、谷氨酰胺、乳酸和铵浓度时间曲线,以及细胞能量状态。敏感性分析确定了最敏感的参数。然后,该模型被证明易于适应研究丁酸钠对 CHO 细胞代谢的影响,其中将其应用于丁酸钠添加分别在指数生长中期(48 h)或早期平台期(74 h)的情况。在这两种情况下,都使用全局优化例程同时估计最敏感的参数,而将不敏感的参数视为常数。最后,计算了估计参数的置信区间。本文的结果进一步证实了我们之前的发现,即在指数生长中期进行丁酸钠处理可能导致细胞代谢向通过三羧酸循环持续和提高葡萄糖利用效率的方向转变。

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