Suppr超能文献

RNA聚合酶II对启动子的清除。

Promoter clearance by RNA polymerase II.

作者信息

Luse Donal S

机构信息

Department of Molecular Genetics, Cleveland Clinic, Cleveland, OH 44195, USA.

出版信息

Biochim Biophys Acta. 2013 Jan;1829(1):63-8. doi: 10.1016/j.bbagrm.2012.08.010. Epub 2012 Sep 6.

Abstract

Many changes must occur to the RNA polymerase II (pol II) transcription complex as it makes the transition from initiation into transcript elongation. During this intermediate phase of transcription, contact with initiation factors is lost and stable association with the nascent transcript is established. These changes collectively comprise promoter clearance. Once the transcript elongation complex has reached a point where its properties are indistinguishable from those of complexes with much longer transcripts, promoter clearance is complete. The clearance process for pol II consists of a number of steps and it extends for a surprisingly long distance downstream of transcription start. This article is part of a Special Issue entitled: RNA polymerase II Transcript Elongation.

摘要

当RNA聚合酶II(pol II)转录复合物从起始阶段过渡到转录延伸阶段时,会发生许多变化。在转录的这个中间阶段,与起始因子的接触丧失,与新生转录本建立稳定关联。这些变化共同构成启动子清除。一旦转录延伸复合物达到其特性与具有长得多的转录本的复合物无法区分的程度,启动子清除就完成了。pol II的清除过程由多个步骤组成,并且在转录起始点下游延伸出惊人的长距离。本文是名为:RNA聚合酶II转录延伸的特刊的一部分。

相似文献

1
Promoter clearance by RNA polymerase II.
Biochim Biophys Acta. 2013 Jan;1829(1):63-8. doi: 10.1016/j.bbagrm.2012.08.010. Epub 2012 Sep 6.
2
Gdown1 Associates Efficiently with RNA Polymerase II after Promoter Clearance and Displaces TFIIF during Transcript Elongation.
PLoS One. 2016 Oct 7;11(10):e0163649. doi: 10.1371/journal.pone.0163649. eCollection 2016.
3
Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells.
Mol Cell. 2013 Apr 25;50(2):212-22. doi: 10.1016/j.molcel.2013.02.015. Epub 2013 Mar 21.
4
RNA polymerase II transcription: structure and mechanism.
Biochim Biophys Acta. 2013 Jan;1829(1):2-8. doi: 10.1016/j.bbagrm.2012.09.003. Epub 2012 Sep 18.
5
The Mediator complex and transcription elongation.
Biochim Biophys Acta. 2013 Jan;1829(1):69-75. doi: 10.1016/j.bbagrm.2012.08.017. Epub 2012 Sep 13.
6
Eukaryotic core promoters and the functional basis of transcription initiation.
Nat Rev Mol Cell Biol. 2018 Oct;19(10):621-637. doi: 10.1038/s41580-018-0028-8.
7
The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II.
Mol Cell. 2005 Jul 1;19(1):101-10. doi: 10.1016/j.molcel.2005.05.024.
8
Everything at once: cryo-EM yields remarkable insights into human RNA polymerase II transcription.
Nat Struct Mol Biol. 2021 Jul;28(7):540-543. doi: 10.1038/s41594-021-00613-6.

引用本文的文献

1
Cyclin-dependent kinases as mediators of aberrant transcription in prostate cancer.
Transl Oncol. 2025 May;55:102378. doi: 10.1016/j.tranon.2025.102378. Epub 2025 Mar 30.
2
The general transcription factors (GTFs) of RNA polymerase II and their roles in plant development and stress responses.
Crit Rev Biochem Mol Biol. 2024 Oct;59(5):267-309. doi: 10.1080/10409238.2024.2408562. Epub 2024 Oct 3.
4
Tox4 regulates transcriptional elongation and reinitiation during murine T cell development.
Commun Biol. 2023 Jun 7;6(1):613. doi: 10.1038/s42003-023-04992-y.
5
Transcription associated cyclin-dependent kinases as therapeutic targets for prostate cancer.
Oncogene. 2022 Jun;41(24):3303-3315. doi: 10.1038/s41388-022-02347-1. Epub 2022 May 14.
7
Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol Cell. 2022 Feb 3;82(3):660-676.e9. doi: 10.1016/j.molcel.2021.12.020. Epub 2022 Jan 19.
8
Negative elongation factor regulates muscle progenitor expansion for efficient myofiber repair and stem cell pool repopulation.
Dev Cell. 2021 Apr 5;56(7):1014-1029.e7. doi: 10.1016/j.devcel.2021.02.025. Epub 2021 Mar 17.
9
The capping enzyme facilitates promoter escape and assembly of a follow-on preinitiation complex for reinitiation.
Proc Natl Acad Sci U S A. 2019 Nov 5;116(45):22573-22582. doi: 10.1073/pnas.1905449116. Epub 2019 Oct 7.
10
Promoter-proximal pausing of RNA polymerase II: a nexus of gene regulation.
Genes Dev. 2019 Aug 1;33(15-16):960-982. doi: 10.1101/gad.325142.119. Epub 2019 May 23.

本文引用的文献

2
Genome-wide structure and organization of eukaryotic pre-initiation complexes.
Nature. 2012 Jan 18;483(7389):295-301. doi: 10.1038/nature10799.
3
Functional association of Gdown1 with RNA polymerase II poised on human genes.
Mol Cell. 2012 Jan 13;45(1):38-50. doi: 10.1016/j.molcel.2011.10.022.
4
Inactivated RNA polymerase II open complexes can be reactivated with TFIIE.
J Biol Chem. 2012 Jan 6;287(2):961-7. doi: 10.1074/jbc.M111.297572. Epub 2011 Nov 27.
5
Structural basis of initial RNA polymerase II transcription.
EMBO J. 2011 Nov 4;30(23):4755-63. doi: 10.1038/emboj.2011.396.
6
Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF.
Mol Cell Biol. 2012 Jan;32(1):12-25. doi: 10.1128/MCB.06242-11. Epub 2011 Oct 24.
8
Initiation complex structure and promoter proofreading.
Science. 2011 Jul 29;333(6042):633-7. doi: 10.1126/science.1206629.
10
Direct tests of the energetic basis of abortive cycling in transcription.
Biochemistry. 2011 Aug 16;50(32):7015-22. doi: 10.1021/bi200620q. Epub 2011 Jul 21.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验