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将生物信息学融入本科生物学课程及其对数学技能发展的影响。

Integration of bioinformatics into an undergraduate biology curriculum and the impact on development of mathematical skills.

作者信息

Wightman Bruce, Hark Amy T

机构信息

Biology Department, Muhlenberg College, Allentown, PA 18104, USA.

出版信息

Biochem Mol Biol Educ. 2012 Sep-Oct;40(5):310-9. doi: 10.1002/bmb.20637. Epub 2012 Aug 22.

Abstract

The development of fields such as bioinformatics and genomics has created new challenges and opportunities for undergraduate biology curricula. Students preparing for careers in science, technology, and medicine need more intensive study of bioinformatics and more sophisticated training in the mathematics on which this field is based. In this study, we deliberately integrated bioinformatics instruction at multiple course levels into an existing biology curriculum. Students in an introductory biology course, intermediate lab courses, and advanced project-oriented courses all participated in new course components designed to sequentially introduce bioinformatics skills and knowledge, as well as computational approaches that are common to many bioinformatics applications. In each course, bioinformatics learning was embedded in an existing disciplinary instructional sequence, as opposed to having a single course where all bioinformatics learning occurs. We designed direct and indirect assessment tools to follow student progress through the course sequence. Our data show significant gains in both student confidence and ability in bioinformatics during individual courses and as course level increases. Despite evidence of substantial student learning in both bioinformatics and mathematics, students were skeptical about the link between learning bioinformatics and learning mathematics. While our approach resulted in substantial learning gains, student "buy-in" and engagement might be better in longer project-based activities that demand application of skills to research problems. Nevertheless, in situations where a concentrated focus on project-oriented bioinformatics is not possible or desirable, our approach of integrating multiple smaller components into an existing curriculum provides an alternative.

摘要

生物信息学和基因组学等领域的发展给本科生物学课程带来了新的挑战和机遇。准备从事科学、技术和医学职业的学生需要更深入地学习生物信息学,并接受该领域所基于的数学方面更复杂的培训。在本研究中,我们有意将多个课程层面的生物信息学教学融入现有的生物学课程中。基础生物学课程、中级实验课程和高级项目导向课程的学生都参与了新的课程组成部分,这些部分旨在按顺序介绍生物信息学技能和知识,以及许多生物信息学应用中常见的计算方法。在每门课程中,生物信息学学习都融入现有的学科教学序列中,而不是设置一门所有生物信息学学习都在其中进行的单一课程。我们设计了直接和间接评估工具,以跟踪学生在整个课程序列中的进展。我们的数据显示,在各个课程中以及随着课程难度的增加,学生在生物信息学方面的信心和能力都有显著提高。尽管有证据表明学生在生物信息学和数学方面都有大量学习,但学生对学习生物信息学与学习数学之间的联系表示怀疑。虽然我们的方法带来了显著的学习成果,但在需要将技能应用于研究问题的基于项目的较长活动中,学生的“接受度”和参与度可能会更好。然而,在无法或不适合集中关注项目导向的生物信息学的情况下,我们将多个较小组成部分融入现有课程的方法提供了一种替代方案。

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