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THE PRICE EQUATION, FISHER'S FUNDAMENTAL THEOREM, KIN SELECTION, AND CAUSAL ANALYSIS.价格方程、费雪基本定理、亲缘选择与因果分析。
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MOLECULAR EVOLUTION OVER THE MUTATIONAL LANDSCAPE.突变景观上的分子进化
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Negative epistasis between beneficial mutations in an evolving bacterial population.进化中的细菌群体中有益突变之间的负遗传相互作用。
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Diminishing returns epistasis among beneficial mutations decelerates adaptation.有益突变间的报酬递减性上位性会减缓适应速度。
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Intratumor heterogeneity in evolutionary models of tumor progression.肿瘤演进模型中的肿瘤内异质性。
Genetics. 2011 Jun;188(2):461-77. doi: 10.1534/genetics.110.125724. Epub 2011 Mar 15.
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The noisy edge of traveling waves.行波的嘈杂边缘。
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Evolutionary dynamics of tumor progression with random fitness values.具有随机适应度值的肿瘤进展的进化动力学
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The dynamics of adaptation on correlated fitness landscapes.相关适应度景观上的适应动力学。
Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18638-43. doi: 10.1073/pnas.0905497106. Epub 2009 Oct 26.
10
A general extreme value theory model for the adaptation of DNA sequences under strong selection and weak mutation.一种用于强选择和弱突变下DNA序列适应性的广义极值理论模型。
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适应、不受监管的种群的动态与修正的基本定理。

The dynamics of adapting, unregulated populations and a modified fundamental theorem.

机构信息

Santa Fe Institute, Santa Fe, NM, USA.

出版信息

J R Soc Interface. 2013 Jan 6;10(78):20120538. doi: 10.1098/rsif.2012.0538. Epub 2012 Sep 19.

DOI:10.1098/rsif.2012.0538
PMID:22993247
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3565778/
Abstract

A population in a novel environment will accumulate adaptive mutations over time, and the dynamics of this process depend on the underlying fitness landscape: the fitness of and mutational distance between possible genotypes in the population. Despite its fundamental importance for understanding the evolution of a population, inferring this landscape from empirical data has been problematic. We develop a theoretical framework to describe the adaptation of a stochastic, asexual, unregulated, polymorphic population undergoing beneficial, neutral and deleterious mutations on a correlated fitness landscape. We generate quantitative predictions for the change in the mean fitness and within-population variance in fitness over time, and find a simple, analytical relationship between the distribution of fitness effects arising from a single mutation, and the change in mean population fitness over time: a variant of Fisher's 'fundamental theorem' which explicitly depends on the form of the landscape. Our framework can therefore be thought of in three ways: (i) as a set of theoretical predictions for adaptation in an exponentially growing phase, with applications in pathogen populations, tumours or other unregulated populations; (ii) as an analytically tractable problem to potentially guide theoretical analysis of regulated populations; and (iii) as a basis for developing empirical methods to infer general features of a fitness landscape.

摘要

在新环境中,群体将随着时间的推移积累适应性突变,而这一过程的动态取决于潜在的适应度景观:群体中可能基因型的适应度和突变距离。尽管这对于理解群体的进化至关重要,但从经验数据中推断这种景观一直存在问题。我们开发了一个理论框架,用于描述在相关适应度景观上经历有益、中性和有害突变的随机、无性、无调节、多态群体的适应。我们对随时间推移的平均适应度和适应度的种群内方差的变化产生了定量预测,并发现单个突变产生的适应度效应分布与随时间推移的平均种群适应度变化之间存在简单的解析关系:这是一种变体费希尔的“基本定理”,它明确取决于景观的形式。因此,我们可以从以下三种方式来考虑我们的框架:(i)作为指数增长阶段适应的一组理论预测,适用于病原体种群、肿瘤或其他无调节种群;(ii)作为潜在的可分析问题,指导对有调节种群的理论分析;(iii)作为开发推断适应度景观一般特征的经验方法的基础。