Monterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA.
BMC Evol Biol. 2012 Sep 25;12:189. doi: 10.1186/1471-2148-12-189.
Osedax worms use a proliferative root system to extract nutrients from the bones of sunken vertebrate carcasses. The roots contain bacterial endosymbionts that contribute to the nutrition of these mouthless and gutless worms. The worms acquire these essential endosymbionts locally from the environment in which their larvae settle. Here we report on the temporal dynamics of endosymbiont diversity hosted by nine Osedax species sampled during a three-year investigation of an experimental whale fall at 1820-m depth in the Monterey Bay, California. The host species were identified by their unique mitochondrial COI haplotypes. The endosymbionts were identified by ribotyping with PCR primers specifically designed to target Oceanospirillales.
Thirty-two endosymbiont ribotypes associated with these worms clustered into two distinct bacterial ribospecies that together comprise a monophyletic group, mostly restricted to deep waters (>1000 m). Statistical analyses confirmed significant changes in the relative abundances of host species and the two dominant endosymbiont ribospecies during the three-year sampling period. Bone type (whale vs. cow) also had a significant effect on host species, but not on the two dominant symbiont ribospecies. No statistically significant association existed between the host species and endosymbiont ribospecies.
Standard PCR and direct sequencing proved to be an efficient method for ribotyping the numerically dominant endosymbiont strains infecting a large sample of host individuals; however, this method did not adequately represent the frequency of mixed infections, which appears to be the rule rather than an exception for Osedax individuals. Through cloning and the use of experimental dilution series, we determined that minority ribotypes constituting less than 30% of a mixture would not likely be detected, leading to underestimates of the frequency of multiple infections in host individuals.
食骨蠕虫利用增生的根系从沉没的脊椎动物尸体骨骼中提取营养物质。这些根系中含有细菌内共生体,为这些无口无肠的蠕虫提供营养。蠕虫从幼虫定居的环境中局部获得这些必需的内共生体。在这里,我们报告了在加利福尼亚州蒙特利湾 1820 米深处的一项实验性鲸落三年调查中,从 9 种食骨蠕虫中采样的内共生体多样性的时间动态。宿主物种通过其独特的线粒体 COI 单倍型来识别。内共生体通过针对 Oceanospirillales 的特定设计的 PCR 引物进行核糖体分型来识别。
与这些蠕虫相关的 32 种内共生体核糖体类型聚类为两种不同的细菌核糖体种,它们共同构成一个单系群,主要局限于深海(>1000 米)。统计分析证实,在三年的采样期间,宿主物种和两种主要内共生体核糖体种的相对丰度发生了显著变化。骨骼类型(鲸骨与牛骨)对内共生体核糖体种也有显著影响,但对两种主要共生体核糖体种没有影响。宿主物种与内共生体核糖体种之间不存在统计学上显著的关联。
标准 PCR 和直接测序被证明是一种有效的核糖体分型方法,可用于对感染大量宿主个体的数量优势内共生体菌株进行分型;然而,这种方法不能充分代表混合感染的频率,对于食骨蠕虫个体来说,混合感染似乎是常态而不是例外。通过克隆和使用实验稀释系列,我们确定构成混合物不到 30%的少数核糖体类型不太可能被检测到,这导致对内共生体在宿主个体中多重感染频率的低估。