Suppr超能文献

Accessing and using chemical property databases.

作者信息

Hastings Janna, Josephs Zara, Steinbeck Christoph

机构信息

European Bioinformatics Institute, Hinxton, UK.

出版信息

Methods Mol Biol. 2012;929:193-219. doi: 10.1007/978-1-62703-050-2_9.

Abstract

Chemical compounds participate in all the processes of life. Understanding the complex interactions of small molecules such as metabolites and drugs and the biological macromolecules that consume and produce them is key to gaining a wider understanding in a systemic context. Chemical property databases collect information on the biological effects and physicochemical properties of chemical entities. Accessing and using such databases is key to understanding the chemistry of toxic molecules. In this chapter, we present methods to search, understand, download, and manipulate the wealth of information available in public chemical property databases, with particular focus on the database of Chemical Entities of Biological Interest (ChEBI).

摘要

相似文献

1
Accessing and using chemical property databases.
Methods Mol Biol. 2012;929:193-219. doi: 10.1007/978-1-62703-050-2_9.
2
Accessing, using, and creating chemical property databases for computational toxicology modeling.
Methods Mol Biol. 2012;929:221-41. doi: 10.1007/978-1-62703-050-2_10.
3
A database for chemical proteomics: ChEBI.
Methods Mol Biol. 2012;803:273-96. doi: 10.1007/978-1-61779-364-6_19.
4
"Good annotation practice" for chemical data in biology.
In Silico Biol. 2007;7(2 Suppl):S45-56.
5
Chemical Entities of Biological Interest: an update.
Nucleic Acids Res. 2010 Jan;38(Database issue):D249-54. doi: 10.1093/nar/gkp886. Epub 2009 Oct 23.
6
A collaborative database and computational models for tuberculosis drug discovery.
Mol Biosyst. 2010 May;6(5):840-51. doi: 10.1039/b917766c. Epub 2010 Feb 9.
7
ChEBI: an open bioinformatics and cheminformatics resource.
Curr Protoc Bioinformatics. 2009 Jun;Chapter 14:14.9.1-14.9.20. doi: 10.1002/0471250953.bi1409s26.
8
IDPredictor: predict database links in biomedical database.
J Integr Bioinform. 2012 Jun 26;9(2):190. doi: 10.2390/biecoll-jib-2012-190.
9
Combining literature text mining with microarray data: advances for system biology modeling.
Brief Bioinform. 2012 Jan;13(1):61-82. doi: 10.1093/bib/bbr018. Epub 2011 Jun 15.
10
Query Chem: a Google-powered web search combining text and chemical structures.
Bioinformatics. 2006 Jul 1;22(13):1670-3. doi: 10.1093/bioinformatics/btl155. Epub 2006 May 3.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验