Suppr超能文献

压力对溶菌酶和水的低频振动模式的影响:非弹性中子散射和分子动力学模拟研究的补充。

Influence of pressure on the low-frequency vibrational modes of lysozyme and water: a complementary inelastic neutron scattering and molecular dynamics simulation study.

机构信息

Laboratoire Léon Brillouin, CEA-CNRS, CEA-Saclay, 91191 Gif-sur-Yvette Cedex, France.

出版信息

Proteins. 2013 Feb;81(2):326-40. doi: 10.1002/prot.24189. Epub 2012 Nov 12.

Abstract

We performed complementary inelastic neutron scattering (INS) experiments and molecular dynamics (MD) simulations to study the influence of pressure on the low-frequency vibrational modes of lysozyme in aqueous solution in the 1 atm-6 kbar range. Increasing pressure induces a high-frequency shift of the low-frequency part (<10 meV = 80 cm(-1)) of the vibrational density of states (VDOS), g(ω), of both lysozyme and water that reveals a stiffening of the interactions ascribed to the reduction of the protein and water volumes. Accordingly, high pressures increase the curvature of the free energy profiles of the protein quasiharmonic vibrational modes. Furthermore, the nonlinear influence of pressure on the g(ω) of lysozyme indicates a change of protein dynamics that reflects the nonlinear pressure dependence of the protein compressibility. An analogous dynamical change is observed for water and stems from the distortion of its tetrahedral structure under pressure. Moreover, our study reveals that the structural, dynamical, and vibrational properties of the hydration water of lysozyme are less sensitive to pressure than those of bulk water, thereby evidencing the strong influence of the protein surface on hydration water.

摘要

我们进行了互补非弹性中子散射(INS)实验和分子动力学(MD)模拟,以研究压力对水相中溶菌酶低频振动模式的影响,压力范围为 1 大气压至 6 千巴。随着压力的增加,振动态密度(VDOS)g(ω)的低频部分(<10 meV = 80 cm(-1))的高频移动表明相互作用变硬,这归因于蛋白质和水体积的减少。因此,高压会增加蛋白质准谐振动模式自由能曲线的曲率。此外,压力对溶菌酶 g(ω)的非线性影响表明蛋白质动力学发生变化,反映了蛋白质压缩性的非线性压力依赖性。水也观察到类似的动态变化,这源于其四面体结构在压力下的变形。此外,我们的研究表明,溶菌酶水合水的结构、动力学和振动性质对压力的敏感性低于体相水,从而证明了蛋白质表面对水合水的强烈影响。

相似文献

4
Influence of hydration on the dynamics of lysozyme.水合作用对溶菌酶动力学的影响。
Biophys J. 2006 Oct 1;91(7):2573-88. doi: 10.1529/biophysj.106.082214. Epub 2006 Jul 14.

引用本文的文献

1
Universality and Structural Implications of the Boson Peak in Proteins.蛋白质中玻色子峰的普遍性及其结构意义。
Biophys J. 2019 Jul 23;117(2):229-238. doi: 10.1016/j.bpj.2019.06.007. Epub 2019 Jun 14.
2
Pressure effects on collective density fluctuations in water and protein solutions.压力对水和蛋白质溶液中集体密度涨落的影响。
Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):11410-11415. doi: 10.1073/pnas.1705279114. Epub 2017 Oct 9.
3
Water Determines the Structure and Dynamics of Proteins.水决定蛋白质的结构与动力学。
Chem Rev. 2016 Jul 13;116(13):7673-97. doi: 10.1021/acs.chemrev.5b00664. Epub 2016 May 17.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验