Bellissent-Funel Marie-Claire, Hassanali Ali, Havenith Martina, Henchman Richard, Pohl Peter, Sterpone Fabio, van der Spoel David, Xu Yao, Garcia Angel E
Laboratoire Léon Brillouin (CEA-CNRS) CEA Saclay F-91191 Gif Sur Yvette, France.
International Center for Theoretical Physics, Condensed Matter and Statistical Physics 34151 Trieste, Italy.
Chem Rev. 2016 Jul 13;116(13):7673-97. doi: 10.1021/acs.chemrev.5b00664. Epub 2016 May 17.
Water is an essential participant in the stability, structure, dynamics, and function of proteins and other biomolecules. Thermodynamically, changes in the aqueous environment affect the stability of biomolecules. Structurally, water participates chemically in the catalytic function of proteins and nucleic acids and physically in the collapse of the protein chain during folding through hydrophobic collapse and mediates binding through the hydrogen bond in complex formation. Water is a partner that slaves the dynamics of proteins, and water interaction with proteins affect their dynamics. Here we provide a review of the experimental and computational advances over the past decade in understanding the role of water in the dynamics, structure, and function of proteins. We focus on the combination of X-ray and neutron crystallography, NMR, terahertz spectroscopy, mass spectroscopy, thermodynamics, and computer simulations to reveal how water assist proteins in their function. The recent advances in computer simulations and the enhanced sensitivity of experimental tools promise major advances in the understanding of protein dynamics, and water surely will be a protagonist.
水是蛋白质和其他生物分子稳定性、结构、动力学及功能的重要参与者。从热力学角度来看,水环境的变化会影响生物分子的稳定性。在结构方面,水在化学上参与蛋白质和核酸的催化功能,在物理上通过疏水塌缩参与蛋白质折叠过程中蛋白质链的塌缩,并在复合物形成过程中通过氢键介导结合。水是影响蛋白质动力学的一个因素,水与蛋白质的相互作用会影响其动力学。在此,我们综述过去十年间在理解水在蛋白质动力学、结构和功能中作用方面的实验和计算进展。我们着重介绍X射线和中子晶体学、核磁共振、太赫兹光谱、质谱、热力学以及计算机模拟的结合,以揭示水如何协助蛋白质发挥功能。计算机模拟的最新进展以及实验工具灵敏度的提高有望在理解蛋白质动力学方面取得重大进展,而水无疑将成为其中的关键因素。