俄罗斯堪察加半岛淡水温泉中分离得到的嗜热纤维素分解古菌脱硫弧菌的全基因组序列。
Complete genome sequence of Desulfurococcus fermentans, a hyperthermophilic cellulolytic crenarchaeon isolated from a freshwater hot spring in Kamchatka, Russia.
机构信息
Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA.
出版信息
J Bacteriol. 2012 Oct;194(20):5703-4. doi: 10.1128/JB.01314-12.
Abstract
Desulfurococcus fermentans is the first known cellulolytic archaeon. This hyperthermophilic and strictly anaerobic crenarchaeon produces hydrogen from fermentation of various carbohydrates and peptides without inhibition by accumulating hydrogen. The complete genome sequence reported here suggested that D. fermentans employs membrane-bound hydrogenases and novel glycohydrolases for hydrogen production from cellulose.
摘要
产硫化叶菌是已知的第一种能够分解纤维素的古菌。这种高温、严格厌氧的古菌能够从各种碳水化合物和肽类的发酵中产生氢气，并且不会被积累的氢气所抑制。这里报道的完整基因组序列表明，产硫化叶菌利用膜结合的氢化酶和新型糖水解酶从纤维素中生产氢气。
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本文引用的文献
1
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.GenePRIMP：原核基因组的基因预测改进流程。
Nat Methods. 2010 Jun;7(6):455-7. doi: 10.1038/nmeth.1457. Epub 2010 May 2.
2
Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格：原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
3
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Int J Syst Evol Microbiol. 2009 Jul;59(Pt 7):1743-7. doi: 10.1099/ijs.0.006726-0. Epub 2009 Jun 19.
4
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
5
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