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β-血红蛋白病疾病严重程度的遗传修饰因子研究。

The search for genetic modifiers of disease severity in the β-hemoglobinopathies.

机构信息

Montreal Heart Institute and Université Montréal, Montréal, Québec H1T 1C8, Canada.

出版信息

Cold Spring Harb Perspect Med. 2012 Oct 1;2(10):a015032. doi: 10.1101/cshperspect.a015032.

Abstract

Sickle cell disease (SCD) and β-thalassemia, two monogenic diseases caused by mutations in the β-globin gene, affect millions of individuals worldwide. These hemoglobin disorders are characterized by extreme clinical heterogeneity, complicating patient management and treatment. A better understanding of this patient-to-patient clinical variability would dramatically improve care and might also guide the development of novel therapies. Studies of the natural history of these β-hemoglobinopathies have identified fetal hemoglobin levels and concomitant α-thalassemia as important modifiers of disease severity. Several small-scale studies have attempted to identify additional genetic modifiers of SCD and β-thalassemia, without much success. Fortunately, improved knowledge of the human genome and the development of new genomic tools, such as genome-wide genotyping arrays and next-generation DNA sequencers, offer new opportunities to use genetics to better understand the causes of the many complications observed in β-hemoglobinopathy patients. Here I discuss the most important factors to consider when planning an experiment to find associations between β-hemoglobinopathy-related complications and DNA sequence variants, with a focus on how to successfully perform a genome-wide association study. I also review the literature and explain why most published findings in the field of SCD modifier genetics are likely to be false-positive reports, with the goal to draw lessons allowing investigators to design better genetic experiments.

摘要

镰状细胞病(SCD)和β-地中海贫血是两种由β-珠蛋白基因突变引起的单基因疾病,影响着全球数百万人。这些血红蛋白疾病的特点是临床表现存在极端的异质性,这使得患者的管理和治疗变得复杂。更好地了解这种个体间的临床变异性将极大地改善护理,也可能指导新疗法的开发。对这些β-血红蛋白病自然史的研究已经确定了胎儿血红蛋白水平和伴随的α-地中海贫血是疾病严重程度的重要修饰因子。几项小规模研究试图确定 SCD 和 β-地中海贫血的其他遗传修饰因子,但并没有取得太多成功。幸运的是,人类基因组知识的提高和新基因组工具的发展,如全基因组基因分型阵列和新一代 DNA 测序仪,为利用遗传学更好地了解β-血红蛋白病患者观察到的许多并发症的原因提供了新的机会。在这里,我将讨论在计划发现与β-血红蛋白病相关并发症和 DNA 序列变异之间关联的实验时需要考虑的最重要因素,重点介绍如何成功进行全基因组关联研究。我还回顾了相关文献,并解释了为什么该领域 SCD 修饰遗传研究的大多数已发表发现可能是假阳性报告,目的是吸取经验教训,使研究人员能够设计更好的遗传实验。

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本文引用的文献

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Cold Spring Harb Perspect Med. 2012 Dec 1;2(12):a011726. doi: 10.1101/cshperspect.a011726.
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Intermediate phenotypes in psychiatric disorders.精神障碍的中间表型。
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GCTA: a tool for genome-wide complex trait analysis.GCTA:一种全基因组复杂性状分析工具。
Am J Hum Genet. 2011 Jan 7;88(1):76-82. doi: 10.1016/j.ajhg.2010.11.011. Epub 2010 Dec 17.

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