• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Comparison of some dispersion-corrected and traditional functionals with CCSD(T) and MP2 ab initio methods: dispersion, induction, and basis set superposition error.比较一些经分散修正和传统泛函与 CCSD(T)和 MP2 从头算方法:分散、诱导和基组超交误差。
J Chem Phys. 2012 Oct 7;137(13):134109. doi: 10.1063/1.4755990.
2
Appropriate description of intermolecular interactions in the methane hydrates: an assessment of DFT methods.甲烷水合物中分子间相互作用的恰当描述:DFT 方法的评估。
J Comput Chem. 2013 Jan 15;34(2):121-31. doi: 10.1002/jcc.23112. Epub 2012 Sep 5.
3
A reinvestigation of the dimer of para-benzoquinone and pyrimidine with MP2, CCSD(T), and DFT using functionals including those designed to describe dispersion.重新研究了对苯醌和嘧啶的二聚体,使用了包括旨在描述色散的函数在内的 MP2、CCSD(T) 和 DFT 方法。
J Phys Chem A. 2012 Aug 2;116(30):8100-5. doi: 10.1021/jp3050274. Epub 2012 Jul 19.
4
Assessing the accuracy of SAPT(DFT) interaction energies by comparison with experimentally derived noble gas potentials and molecular crystal lattice energies.通过与实验得出的稀有气体势能和分子晶体晶格能比较来评估 SAPT(DFT)相互作用能的准确性。
Chemphyschem. 2012 Dec 7;13(17):3981-8. doi: 10.1002/cphc.201200469. Epub 2012 Oct 11.
5
Further analysis and comparative study of intermolecular interactions using dimers from the S22 database.使用来自S22数据库的二聚体对分子间相互作用进行进一步分析和比较研究。
J Chem Phys. 2009 Aug 14;131(6):065102. doi: 10.1063/1.3173809.
6
Differences in structure, energy, and spectrum between neutral, protonated, and deprotonated phenol dimers: comparison of various density functionals with ab initio theory.酚二聚体中性、质子化和去质子化之间的结构、能量和光谱差异:各种密度泛函与从头理论的比较。
Phys Chem Chem Phys. 2011 Jan 21;13(3):991-1001. doi: 10.1039/c003008b. Epub 2010 Nov 9.
7
Intermolecular potentials of the silane dimer calculated with Hartree-Fock theory, Møller-Plesset perturbation theory, and density functional theory.用哈特里-福克理论、莫勒-普莱斯微扰理论和密度泛函理论计算的硅烷二聚体的分子间势。
J Phys Chem A. 2007 Nov 22;111(46):11922-9. doi: 10.1021/jp0752973. Epub 2007 Oct 27.
8
Calculations on noncovalent interactions and databases of benchmark interaction energies.非共价相互作用的计算和基准相互作用能数据库。
Acc Chem Res. 2012 Apr 17;45(4):663-72. doi: 10.1021/ar200255p. Epub 2012 Jan 6.
9
Ab initio and density functional theory reinvestigation of gas-phase sulfuric acid monohydrate and ammonium hydrogen sulfate.从头算和密度泛函理论对气相一水合硫酸和硫酸氢铵的再研究。
J Phys Chem A. 2006 Jun 8;110(22):7178-88. doi: 10.1021/jp0613081.
10
Effect of microsolvation on zwitterionic glycine: an ab initio and density functional theory study.微溶剂化对两性离子甘氨酸的影响:从头算和密度泛函理论研究
J Mol Model. 2008 May;14(5):385-92. doi: 10.1007/s00894-008-0282-3. Epub 2008 Mar 11.

引用本文的文献

1
Unravelling the Glycan Code: Molecular Dynamics and Quantum Chemistry Reveal How O-Glycan Functional Groups Govern OgpA Selectivity in Mucin Degradation by Akkermansia muciniphila.解读聚糖密码:分子动力学和量子化学揭示O-聚糖官能团如何在嗜黏蛋白阿克曼氏菌降解黏蛋白过程中调控OgpA的选择性。
Microb Biotechnol. 2025 Apr;18(4):e70091. doi: 10.1111/1751-7915.70091.
2
Ligation state of nickel during C-O bond activation with monodentate phosphines.单齿膦激活C-O键过程中镍的配位状态。
Tetrahedron. 2018 Nov 22;74(47):6717-6725. doi: 10.1016/j.tet.2018.10.025. Epub 2018 Oct 17.
3
Is the Fluorine in Molecules Dispersive? Is Molecular Electrostatic Potential a Valid Property to Explore Fluorine-Centered Non-Covalent Interactions?分子中的氟原子是弥散的吗?分子静电势是探索氟中心非共价相互作用的有效性质吗?
Molecules. 2019 Jan 22;24(3):379. doi: 10.3390/molecules24030379.
4
Computational study on single molecular spectroscopy of tyrosin-glycine, tryptophane-glycine and glycine-tryptophane.酪氨酸-甘氨酸、色氨酸-甘氨酸和甘氨酸-色氨酸单分子光谱的计算研究。
Sci Rep. 2017 Nov 20;7(1):15869. doi: 10.1038/s41598-017-16234-3.
5
Testing the CP-correction procedure with different DFT methods on H-bonding complexes of κ-carrabiose with water molecules.使用不同的密度泛函理论(DFT)方法对κ-卡拉胶与水分子的氢键复合物进行CP校正程序测试。
J Mol Model. 2017 Jan;23(1):31. doi: 10.1007/s00894-016-3199-2. Epub 2017 Jan 14.
6
Exploring Strong Interactions in Proteins with Quantum Chemistry and Examples of Their Applications in Drug Design.用量子化学探索蛋白质中的强相互作用及其在药物设计中的应用实例
PLoS One. 2015 Sep 4;10(9):e0137113. doi: 10.1371/journal.pone.0137113. eCollection 2015.
7
Capping parallel β-sheets of acetyl(Ala)6NH2 with an acetyl(Ala)5ProNH2 can arrest the growth of the sheet, suggesting a potential for curtailing amyloid growth. An ONIOM and density functional theory study.用乙酰基(丙氨酸)5-脯氨酸酰胺封端乙酰基(丙氨酸)6-酰胺的平行β-折叠可以阻止折叠片的生长,这表明具有抑制淀粉样蛋白生长的潜力。一项ONIOM和密度泛函理论研究。
Biochemistry. 2014 Feb 4;53(4):617-23. doi: 10.1021/bi401366w. Epub 2014 Jan 23.
8
The interactions of phenylalanines in β-sheet-like structures from molecular orbital calculations using density functional theory (DFT), MP2, and CCSD(T) methods.采用密度泛函理论(DFT)、MP2 和 CCSD(T)方法进行分子轨道计算,研究苯丙氨酸在β-折叠样结构中的相互作用。
J Chem Phys. 2013 Jun 28;138(24):245102. doi: 10.1063/1.4811712.
9
The folding of acetyl(Ala)28NH2 and acetyl(Ala)40NH2 extended strand peptides into antiparallel β-sheets. A density functional theory study of β-sheets with β-turns.乙酰基(Ala)28NH2 和乙酰基(Ala)40NH2 延伸链肽折叠成反平行 β-折叠。含 β-转角的 β-折叠的密度泛函理论研究。
J Phys Chem B. 2012 Dec 6;116(48):14017-22. doi: 10.1021/jp3094947. Epub 2012 Nov 27.
10
Comparison of some dispersion-corrected and traditional functionals as applied to peptides and conformations of cyclohexane derivatives.比较一些用于肽和环己烷衍生物构象的分散校正和传统函数。
J Chem Phys. 2012 Jul 28;137(4):044109. doi: 10.1063/1.4737517.

本文引用的文献

1
Symmetry-Adapted Perturbation-Theory Interaction-Energy Decomposition for Hydrogen-Bonded and Stacking Structures.氢键和堆积结构的对称自适应微扰理论相互作用能分解。
J Chem Theory Comput. 2008 Jun;4(6):892-7. doi: 10.1021/ct800067m.
2
Exploring the Limit of Accuracy of the Global Hybrid Meta Density Functional for Main-Group Thermochemistry, Kinetics, and Noncovalent Interactions.探索全局杂化泛函对主族热化学、动力学和非共价相互作用的精度极限。
J Chem Theory Comput. 2008 Nov 11;4(11):1849-68. doi: 10.1021/ct800246v.
3
Efficient and Accurate Double-Hybrid-Meta-GGA Density Functionals-Evaluation with the Extended GMTKN30 Database for General Main Group Thermochemistry, Kinetics, and Noncovalent Interactions.高效准确的双杂化-泛函密度泛函——用扩展的 GMTKN30 数据库评估通用主族热化学、动力学和非共价相互作用。
J Chem Theory Comput. 2011 Feb 8;7(2):291-309. doi: 10.1021/ct100466k. Epub 2010 Dec 23.
4
Comparison of some dispersion-corrected and traditional functionals as applied to peptides and conformations of cyclohexane derivatives.比较一些用于肽和环己烷衍生物构象的分散校正和传统函数。
J Chem Phys. 2012 Jul 28;137(4):044109. doi: 10.1063/1.4737517.
5
A reinvestigation of the dimer of para-benzoquinone and pyrimidine with MP2, CCSD(T), and DFT using functionals including those designed to describe dispersion.重新研究了对苯醌和嘧啶的二聚体,使用了包括旨在描述色散的函数在内的 MP2、CCSD(T) 和 DFT 方法。
J Phys Chem A. 2012 Aug 2;116(30):8100-5. doi: 10.1021/jp3050274. Epub 2012 Jul 19.
6
Basis set convergence of the coupled-cluster correction, δ(MP2)(CCSD(T)): best practices for benchmarking non-covalent interactions and the attendant revision of the S22, NBC10, HBC6, and HSG databases.耦合簇修正的基组收敛性,δ(MP2)(CCSD(T)):用于基准测试非共价相互作用的最佳实践以及 S22、NBC10、HBC6 和 HSG 数据库的相应修订。
J Chem Phys. 2011 Nov 21;135(19):194102. doi: 10.1063/1.3659142.
7
Communication: A global hybrid generalized gradient approximation to the exchange-correlation functional that satisfies the second-order density-gradient constraint and has broad applicability in chemistry.交流:一种全局杂化广义梯度近似交换关联泛函,满足二阶密度梯度约束,在化学中有广泛的适用性。
J Chem Phys. 2011 Nov 21;135(19):191102. doi: 10.1063/1.3663871.
8
Closed-shell ring coupled cluster doubles theory with range separation applied on weak intermolecular interactions.采用离域修正的闭壳层键耦合簇双激发理论研究弱分子间相互作用。
J Chem Phys. 2011 Aug 28;135(8):084119. doi: 10.1063/1.3626551.
9
S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures.S66:与生物分子结构相关的基准相互作用能的平衡数据库。
J Chem Theory Comput. 2011 Aug 9;7(8):2427-2438. doi: 10.1021/ct2002946. Epub 2011 Jul 1.
10
A density functional for sparse matter.一种用于稀疏物质的密度泛函。
J Phys Condens Matter. 2009 Feb 25;21(8):084203. doi: 10.1088/0953-8984/21/8/084203. Epub 2009 Jan 30.

比较一些经分散修正和传统泛函与 CCSD(T)和 MP2 从头算方法:分散、诱导和基组超交误差。

Comparison of some dispersion-corrected and traditional functionals with CCSD(T) and MP2 ab initio methods: dispersion, induction, and basis set superposition error.

机构信息

Departments of Chemistry, City University of New York-Hunter College and the Graduate School, 695 Park Avenue, New York, New York 10065, USA.

出版信息

J Chem Phys. 2012 Oct 7;137(13):134109. doi: 10.1063/1.4755990.

DOI:10.1063/1.4755990
PMID:23039587
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3477180/
Abstract

We compare dispersion and induction interactions for noble gas dimers and for Ne, methane, and 2-butyne with HF and LiF using a variety of functionals (including some specifically parameterized to evaluate dispersion interactions) with ab initio methods including CCSD(T) and MP2. We see that inductive interactions tend to enhance dispersion and may be accompanied by charge-transfer. We show that the functionals do not generally follow the expected trends in interaction energies, basis set superposition errors (BSSE), and interaction distances as a function of basis set size. The functionals parameterized to treat dispersion interactions often overestimate these interactions, sometimes by quite a lot, when compared to higher level calculations. Which functionals work best depends upon the examples chosen. The B3LYP and X3LYP functionals, which do not describe pure dispersion interactions, appear to describe dispersion mixed with induction about as accurately as those parametrized to treat dispersion. We observed significant differences in high-level wavefunction calculations in a basis set larger than those used to generate the structures in many of the databases. We discuss the implications for highly parameterized functionals based on these databases, as well as the use of simple potential energy for fitting the parameters rather than experimentally determinable thermodynamic state functions that involve consideration of vibrational states.

摘要

我们使用各种函数(包括一些专门用于评估色散相互作用的函数)和从头算方法(包括 CCSD(T) 和 MP2),对稀有气体二聚体以及 Ne、甲烷和 2-丁炔与 HF 和 LiF 的色散和诱导相互作用进行了比较。我们发现诱导相互作用往往会增强色散,并且可能伴随着电荷转移。我们表明,这些函数并不总是遵循相互作用能、基组超加误差(BSSE)和相互作用距离随基组大小变化的预期趋势。与更高水平的计算相比,专门用于处理色散相互作用的函数通常会高估这些相互作用,有时会高出很多。哪些函数效果最好取决于所选择的例子。B3LYP 和 X3LYP 函数不能描述纯色散相互作用,但似乎与那些专门用于处理色散的函数一样,能够准确地描述色散与诱导的混合。我们在比许多数据库中生成结构所用的基组更大的基组中,观察到了高水平波函数计算的显著差异。我们讨论了这些基于数据库的高度参数化函数的意义,以及使用简单的势能来拟合参数而不是实验可确定的涉及振动状态的热力学状态函数。