Cross-reactive DNA microarray probes lead to false discovery of autosomal sex-associated DNA methylation.
作者信息
Chen Yi-an, Choufani Sanaa, Grafodatskaya Daria, Butcher Darci T, Ferreira Jose C, Weksberg Rosanna
出版信息
Am J Hum Genet. 2012 Oct 5;91(4):762-4. doi: 10.1016/j.ajhg.2012.06.020.
Abstract
摘要
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本文引用的文献
1
DNA methylation signatures in development and aging of the human prefrontal cortex.人类前额叶皮层发育和衰老过程中的 DNA 甲基化特征。
Am J Hum Genet. 2012 Feb 10;90(2):260-72. doi: 10.1016/j.ajhg.2011.12.020. Epub 2012 Feb 2.
2
Chromosome-wide DNA methylation analysis predicts human tissue-specific X inactivation.全染色体 DNA 甲基化分析预测人类组织特异性 X 染色体失活。
Hum Genet. 2011 Aug;130(2):187-201. doi: 10.1007/s00439-011-1007-8. Epub 2011 May 20.
3
Parental ages and levels of DNA methylation in the newborn are correlated.父母年龄与新生儿的 DNA 甲基化水平相关。
BMC Med Genet. 2011 Mar 31;12:47. doi: 10.1186/1471-2350-12-47.
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Racial differences in gene-specific DNA methylation levels are present at birth.基因特异性DNA甲基化水平的种族差异在出生时就已存在。
Birth Defects Res A Clin Mol Teratol. 2011 Aug;91(8):728-36. doi: 10.1002/bdra.20770. Epub 2011 Feb 9.
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Sequence overlap between autosomal and sex-linked probes on the Illumina HumanMethylation27 microarray.Illumina HumanMethylation27 微阵列上常染色体和性连锁探针之间的序列重叠。
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A study of the influence of sex on genome wide methylation.一项关于性别对全基因组甲基化影响的研究。
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Sex differential in methylation patterns of selected genes in Singapore Chinese.新加坡华人中特定基因甲基化模式的性别差异。
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