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建模氢键相互作用和分子堆积对 [Ag(乙基烟酸盐)(2)]NO(3) 配合物分子结构的影响。

Modeling the effect of H-bonding interactions and molecular packing on the molecular structure of [Ag(ethylnicotinate)(2)]NO (3) complex.

机构信息

Department of Chemistry, Faculty of Science, Alexandria University, PO Box 426, Ibrahimia, 21525, Alexandria, Egypt.

出版信息

J Mol Model. 2013 Feb;19(2):757-65. doi: 10.1007/s00894-012-1598-6. Epub 2012 Oct 9.

DOI:10.1007/s00894-012-1598-6
PMID:23053009
Abstract

The gas phase molecular structure of a single isolated molecule of [Ag(Etnic)(2)NO(3)];1 where Etnic = Ethylnicotinate was calculated using B3LYP method. The H-bonding interaction between 1 with one (complex 2) and two (complex 3) water molecules together with the dimeric formula Ag(Etnic)(2)NO(3);4 and the tetrameric formula Ag(Etnic)(2)NO(3);5 were calculated using the same level of theory to model the effect of intermolecular interactions and molecular packing on the molecular structure of the titled complex. The H-bond dissociation energies of complexes 2 and 3 were calculated to be in the range of 12.220-14.253 and 30.106-31.055 kcal mol(-1), respectively, indicating the formation of relatively strong H-bonds between 1 and water molecules. The calculations predict bidentate nitrate ligand in the case of 1 and 2, leading to distorted tetrahedral geometry around the silver ion with longer Ag-O distances in case of 2 compared to 1, while 3 has a unidentate nitrate ligand leading to a distorted trigonal planar geometry. The packing of two [Ag(Etnic)(2)NO(3)] complex units; 4 does not affect the molecular geometry around Ag(I) ion compared to 1. In the case of 5, the two asymmetric units of the formula [Ag(Etnic)(2)NO(3)] differ in the bonding mode of the nitrate group, where the geometry around the silver ion is distorted tetrahedral in one unit and trigonal planar in the other. The calculations predicted almost no change in the charge densities at the different atomic sites except at the sites involved in the C-H⋯O interactions as well as at the coordinated nitrogen of the pyridine ring.

摘要

采用 B3LYP 方法计算了 [Ag(Etnic)(2)NO(3)]·1(其中 Etnic=Ethylnicotinate)单个孤立分子的气相分子结构。用相同的理论水平计算了 1 与一个(配合物 2)和两个(配合物 3)水分子之间的氢键相互作用,以及二聚体式 [Ag(Etnic)(2)NO(3)]2·4 和四聚体式 [Ag(Etnic)(2)NO(3)]4·5,以模拟分子间相互作用和分子堆积对标题配合物分子结构的影响。配合物 2 和 3 的氢键离解能分别计算为 12.220-14.253 和 30.106-31.055 kcal/mol,表明 1 与水分子之间形成了相对较强的氢键。计算预测在 1 和 2 的情况下,双齿硝酸根配体导致银离子周围的几何形状呈扭曲四面体,与 1 相比,2 中的 Ag-O 距离较长,而 3 具有单齿硝酸根配体,导致扭曲的三角平面几何形状。两个 [Ag(Etnic)(2)NO(3)]配合物单元 4 的堆积方式与 1 相比,对银(I)离子周围的分子几何形状没有影响。对于 5,式 [Ag(Etnic)(2)NO(3)]的两个不对称单元在硝酸根基团的键合模式上有所不同,其中一个单元中银离子周围的几何形状是扭曲的四面体,而另一个单元是平面三角形。计算预测除了涉及 C-H···O 相互作用的原子位置以及吡啶环的配位氮原子外,其他原子位置的电荷密度几乎没有变化。

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