• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

GroEL 离子为何呈现两种气相构象?

Why do GroEL ions exhibit two gas phase conformers?

机构信息

Mechanical Engineering Department, Yale University, New Haven, CT 06520-8286, USA.

出版信息

J Am Soc Mass Spectrom. 2012 Dec;23(12):2115-21. doi: 10.1007/s13361-012-0454-3. Epub 2012 Oct 6.

DOI:10.1007/s13361-012-0454-3
PMID:23055071
Abstract

The reasons for the existence of two gas phase conformers for electrosprayed ions of the large tetradecameric protein complex GroEL are considered. Key features are that: (1) both conformers extrapolate to very similar cross sections in the limit of zero charge; (2) both conformers supercharge above the maximum value permitted by the Rayleigh criterion; and (3) one of the conformers supercharges substantially more than the other. We hypothesize that the supercharging observed is associated to the approximately cylindrical shape of GroEL in aqueous solution, enabling accumulation of extra charge on either one or two of its bases when they intersect the evaporating drop surface. The two conformers would then correspond to cases when either one or the two bases of the cylinder carry extra charge. Apparently, the conformer symmetrically (doubly) supercharged on both ends is Coulombically stretched, therefore exhibiting a mobility different from the conformer asymmetrically supercharged only on one end. Several general consequences follow. First, non-spherical proteins may generally be charged above the usual Rayleigh limit. Second, we confirm the previously advanced but contentious notion that gas phase protein ions are readily compacted or stretched away from their crystal structure by capillary and Coulombic forces during the electrospraying process.

摘要

考虑到电喷雾离子化的大型十四聚体蛋白复合物 GroEL 存在两种气相构象的原因。关键特征是:(1) 两种构象在电荷为零时都外推到非常相似的截面;(2) 两种构象都在瑞利判据允许的最大值以上超荷;(3) 一种构象的超荷比另一种构象大得多。我们假设观察到的超荷与 GroEL 在水溶液中的近似圆柱形形状有关,当它与蒸发液滴表面相交时,允许在一个或两个基上积累额外的电荷。那么这两种构象将对应于圆柱的一个或两个基携带额外电荷的情况。显然,在两端对称(双重)超荷的构象是库仑拉伸的,因此表现出与仅在一端非对称超荷的构象不同的迁移率。以下是一些普遍的结论。首先,非球形蛋白质通常可以在通常的瑞利极限以上被荷电。其次,我们证实了之前提出的但有争议的观点,即在电喷雾过程中,蛋白质离子会受到毛细力和库仑力的作用,很容易从其晶体结构中被压缩或拉伸。

相似文献

1
Why do GroEL ions exhibit two gas phase conformers?GroEL 离子为何呈现两种气相构象?
J Am Soc Mass Spectrom. 2012 Dec;23(12):2115-21. doi: 10.1007/s13361-012-0454-3. Epub 2012 Oct 6.
2
Tandem differential mobility analysis-mass spectrometry reveals partial gas-phase collapse of the GroEL complex.串联差分迁移率分析-质谱法揭示了 GroEL 复合物的部分气相坍塌。
J Phys Chem B. 2011 Apr 7;115(13):3614-21. doi: 10.1021/jp109172k. Epub 2011 Mar 11.
3
Capillary and Coulombic effects on the gas phase structure of electrosprayed concanavalin A ions and its clusters C(n)(+z) (n = 1-6).毛细作用和库仑力对电喷雾凝聚素 A 离子及其团簇 C(n)(+z) (n = 1-6)气相结构的影响。
J Phys Chem B. 2012 Aug 23;116(33):9882-98. doi: 10.1021/jp210693z. Epub 2012 Aug 10.
4
Ion mobility-mass spectrometry of phosphorylase B ions generated with supercharging reagents but in charge-reducing buffer.用超荷试剂但在电荷减少缓冲液中生成的磷酸化酶 B 离子的离子淌度-质谱分析。
Phys Chem Chem Phys. 2010 Nov 7;12(41):13476-83. doi: 10.1039/c0cp01208d. Epub 2010 Sep 28.
5
Multidimensional separations of ubiquitin conformers in the gas phase: relating ion cross sections to H/D exchange measurements.气相中泛素构象体的多维分离:将离子截面与氢/氘交换测量相关联
J Am Soc Mass Spectrom. 2005 Sep;16(9):1427-1437. doi: 10.1016/j.jasms.2005.04.007.
6
Determination of gas phase protein ion densities via ion mobility analysis with charge reduction.通过带有电荷还原的离子淌度分析测定气相蛋白质离子密度。
Phys Chem Chem Phys. 2011 Dec 28;13(48):21630-41. doi: 10.1039/c1cp22127b. Epub 2011 Nov 10.
7
Supercharging protein complexes from aqueous solution disrupts their native conformations.从水溶液中增强蛋白质复合物会破坏它们的天然构象。
J Am Soc Mass Spectrom. 2012 Feb;23(2):191-200. doi: 10.1007/s13361-011-0301-y. Epub 2011 Dec 13.
8
Coexisting stable conformations of gaseous protein ions.气态蛋白质离子的共存稳定构象。
Proc Natl Acad Sci U S A. 1993 Feb 1;90(3):790-3. doi: 10.1073/pnas.90.3.790.
9
Decharging of globular proteins and protein complexes in electrospray.电喷雾中球状蛋白质和蛋白质复合物的去电荷作用。
Chemistry. 2005 Jan 21;11(3):960-8. doi: 10.1002/chem.200400395.
10
High-Pressure Electrospray Ionization Yields Supercharged Protein Complexes from Native Solutions While Preserving Noncovalent Interactions.高压电喷雾电离从天然溶液中产生带超高电荷的蛋白质复合物,同时保持非共价相互作用。
Anal Chem. 2020 Sep 15;92(18):12312-12321. doi: 10.1021/acs.analchem.0c01965. Epub 2020 Sep 2.

引用本文的文献

1
Determination of Gas-Phase Ion Structures of Locally Polar Homopolymers Through High-Resolution Ion Mobility Spectrometry-Mass Spectrometry.通过高分辨率离子淌度光谱-质谱法测定局部极性均聚物的气相离子结构
J Am Soc Mass Spectrom. 2019 Jun;30(6):905-918. doi: 10.1007/s13361-019-02184-9. Epub 2019 Apr 16.
2
Ion Mobility-Mass Spectrometry Differentiates Protein Quaternary Structures Formed in Solution and in Electrospray Droplets.离子淌度-质谱法可区分在溶液和电喷雾液滴中形成的蛋白质四级结构。
Anal Chem. 2015 Jul 7;87(13):6808-13. doi: 10.1021/acs.analchem.5b01010. Epub 2015 Jun 24.
3
Surface induced dissociation yields substructure of 20S proteasome complexes.

本文引用的文献

1
Capillary and Coulombic effects on the gas phase structure of electrosprayed concanavalin A ions and its clusters C(n)(+z) (n = 1-6).毛细作用和库仑力对电喷雾凝聚素 A 离子及其团簇 C(n)(+z) (n = 1-6)气相结构的影响。
J Phys Chem B. 2012 Aug 23;116(33):9882-98. doi: 10.1021/jp210693z. Epub 2012 Aug 10.
2
Ion mobility measurements of nondenatured 12-150 kDa proteins and protein multimers by tandem differential mobility analysis-mass spectrometry (DMA-MS).采用串联差分迁移率分析-质谱法(DMA-MS)对非变性的 12-150 kDa 蛋白质和蛋白质多聚体进行离子迁移测量。
J Am Soc Mass Spectrom. 2011 Jan;22(1):158-72. doi: 10.1007/s13361-010-0014-7. Epub 2011 Jan 28.
3
表面诱导解离产生20S蛋白酶体复合物的亚结构。
Int J Mass Spectrom. 2015 Feb 1;377:201-204. doi: 10.1016/j.ijms.2014.09.011.
4
Structural analysis of activated SgrAI-DNA oligomers using ion mobility mass spectrometry.使用离子淌度质谱分析激活的 SgrAI-DNA 寡聚物的结构。
Biochemistry. 2013 Jun 25;52(25):4373-81. doi: 10.1021/bi3013214. Epub 2013 Jun 17.
Tandem differential mobility analysis-mass spectrometry reveals partial gas-phase collapse of the GroEL complex.
串联差分迁移率分析-质谱法揭示了 GroEL 复合物的部分气相坍塌。
J Phys Chem B. 2011 Apr 7;115(13):3614-21. doi: 10.1021/jp109172k. Epub 2011 Mar 11.
4
Collision cross sections of proteins and their complexes: a calibration framework and database for gas-phase structural biology.蛋白质及其复合物的碰撞截面:用于气相结构生物学的校准框架和数据库。
Anal Chem. 2010 Nov 15;82(22):9557-65. doi: 10.1021/ac1022953. Epub 2010 Oct 27.
5
Geometry, thermodynamics, and protein.几何、热力学与蛋白质。
J Theor Biol. 2010 Feb 7;262(3):383-90. doi: 10.1016/j.jtbi.2009.09.013. Epub 2009 Oct 23.
6
Chaperonin complexes monitored by ion mobility mass spectrometry.通过离子淌度质谱监测伴侣蛋白复合物。
J Am Chem Soc. 2009 Feb 4;131(4):1452-9. doi: 10.1021/ja8055134.
7
Charge-induced unfolding of multiply charged polyethylene glycol ions.电荷诱导的多电荷聚乙二醇离子的去折叠
J Am Chem Soc. 2004 Sep 29;126(38):12184-90. doi: 10.1021/ja0381306.
8
The interpretation of protein structures: total volume, group volume distributions and packing density.蛋白质结构的阐释:总体积、基团体积分布及堆积密度
J Mol Biol. 1974 Jan 5;82(1):1-14. doi: 10.1016/0022-2836(74)90570-1.
9
Dominant forces in protein folding.蛋白质折叠中的主导力量。
Biochemistry. 1990 Aug 7;29(31):7133-55. doi: 10.1021/bi00483a001.